FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_ACIC1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.267e-22
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            +A E+A  +   E+S+  VT A   R A                AL  A+ +D  L   G+ +GPL G+P+++KD F  +G  TT G  + ++      ++ +V+ + + G VI  KTN+ +  M   ++N+ FG T NP + S   GGSSGG  A VA   +PL +GTD  GSIR P+   G  G +PT
Sbjct:    8 TAVELAAMIAAREVSAEEVTRAHLDRIAAVDPAVHAFLYVDADGALTAARAVDARLAA-GERLGPLAGVPLALKDVFTTRGMPTTCGS-KILEGWIPPYDATVVQKIRDAGIVILGKTNMDEFAMGSSTENSAFGPTRNPWDLSRIPGGSSGGSAAAVAAFEAPLAIGTDTGGSIRQPAAVTGIVGTKPT 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_THEEB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermosynechococcus elongatus (strain BP-1) GN=gatA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.492e-22
Identity = 69/188 (36.70%), Postives = 101/188 (53.72%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAA-IAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            E+ RQL   E S+  +T A+  R A +   L S LT T   +AL +A  +D+ L   G+ +G L G+P++IKD     G +TT    + ++H      S + E L   GA++  KTN+ +  M   ++N+ FG T NP N    +GGSSGG  A VA +     +G+D  GSIR P+  CG  G +PT
Sbjct:    6 ELHRQLVRKERSATEITQAYLDRIAQVEPTLHSFLTVTR-DRALAQAAEVDKRLAA-GEEIGLLTGIPLAIKDNLCTYGVRTTCAS-KMLEHFVPPYESTVTEKLQAAGAIMVGKTNLDEFAMGSSTENSAFGFTANPWNPERVSGGSSGGSAAAVAARECAAALGSDTGGSIRQPAAFCGVVGLKPT 190          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_AQUAE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Aquifex aeolicus GN=gatA PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.492e-22
Identity = 66/194 (34.02%), Postives = 106/194 (54.64%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S +E+   LK GE+S   V  +F  R    ++        ++ +AL++A+ L E  EL      PL G+PI++KD   V+G++TT    + +++  A  ++ ++E L + GA+I  KTN+ +  M   ++ + F  T NP +     GGSSGG  A VA   +P+ +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER-EL------PLFGIPIAVKDNILVEGEKTTCAS-KILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRV 191          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_NATTJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.240e-21
Identity = 66/191 (34.55%), Postives = 98/191 (51.31%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E+ R L+ G+ SS  + T+   R    +            QAL ++K +D      G+ +GPL G+P++IKD    K   TT+   + ++      N+ ++  L E GA+I  KTN+ +  M   ++N+ F  T NP +T    GGSSGG  A VA    PL +G+D  GSIR P+  CG  G +PT  RV
Sbjct:   10 EVKRGLEQGDFSSEELVTSVYDRIEETEDHIKAYITLTKEQALAQSKEIDSQ-RAKGEELGPLAGIPVAIKDNICTKDV-TTSCASKILEDFVPPYNATVISKLAEAGAIIVGKTNMDEFAMGSSTENSAFFVTSNPWDTERVPGGSSGGSAASVASAQVPLALGSDTGGSIRQPASFCGVVGMKPTYGRV 198          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_NOCFA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nocardia farcinica GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.619e-21
Identity = 63/192 (32.81%), Postives = 97/192 (50.52%), Query Frame = 3
Query:  291 TNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T +A E+A+Q+   E+SS+ VT A   R A      +        +ALE A  +D  L     P  PL G+P+++KD F      TT    + ++   +  ++ +   L   G  I  KTN+ +  M   ++N+ +G T NP +T+   GGS GG  A +A + +PL +GTD  GSIR P+    T G +PT
Sbjct:    6 TRTAAELAQQIHAREISSVEVTQAHLDRIAEVDGELNAFLHVAGERALEAAAAVDAALAAGEAPASPLAGVPLALKDVFTTTDMPTTCAS-KILEGWMSPYDATVTTKLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWDTTRIPGGSGGGSAAALASRQAPLAIGTDTGGSIRQPAAVTATVGTKPT 196          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: FAH2A_DANRE (Fatty-acid amide hydrolase 2-A OS=Danio rerio GN=faah2a PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.619e-21
Identity = 62/196 (31.63%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELH--GKPVG----PLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA ++AR+++  E++S+ V  A+  R      L + + +  FS AL+ A  +D+ +E    G+ V     PL G+PI++K+ F ++G   + G +   +   +  ++  V +L   GA+    TN  +  M  +S N+++G T NP++     GGSSGGEG+++    S +G+G+D+ GSIRIP    G +G +P+
Sbjct:   50 SAMQLARKIRRKEVTSVEVVQAYIDRIQEVNPLINAMVKDRFSAALQEAAQVDKLIEEETGGEDVLEDRLPLLGVPITVKEAFALQGMPNSTGLLTR-RDLVSGADAPSVALLKRAGAIPLGVTNCSELCMWLESHNHLYGITNNPYDFERIVGGSSGGEGSILGAGSSVIGIGSDIGGSIRIPCFFNGIFGHKPS 244          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SYNS9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9902) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.114e-21
Identity = 65/188 (34.57%), Postives = 93/188 (49.47%), Query Frame = 3
Query:  315 RQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +QL+ G++SS  +     +R   A+   S   E    +A   A  +D      G+ +GPL GLP++IKD    +G +TT      ++H      S   E L + G V+  KTN+ +  M G ++ + FG T NP N     GGSSGG  A VA       +G+D  GSIR P+  CG  G +PT  RV
Sbjct:   13 QQLQNGDISSRELVDQHIERLETAEPSLSVYNEITVERARADADRIDA-ARAAGESLGPLAGLPLAIKDNLCTRGVRTTCSS-RMLEHFVPPYESTATERLWQAGGVLVGKTNLDEFAMGGSTETSAFGATHNPWNLDHVPGGSSGGSAAAVASGSCIASLGSDTGGSIRQPASFCGVVGLKPTYGRV 198          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_ALHEH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.114e-21
Identity = 66/194 (34.02%), Postives = 96/194 (49.48%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +  EIA  L+ GE SS  VT AF  R      +T+ +      QAL  A   D+   +     GPL G+P+  KD F  +G +T+ G    + +  A  ++ +V  L + G V+  K N+ +  M   ++ + +G   NP +     GGSSGG  A VA + +P   GTD  GSIR P+  CG  G +PT  RV
Sbjct:    5 TVAEIAAALRAGEFSSREVTEAFLARIDALNPVTNAVITPTPEQALAAADAADQ--RIAAGEAGPLTGVPLVHKDIFCTQGVRTSCGS-RMLDNFTAPYDATVVGKLADAGMVMLGKANMDEFAMGSSNETSYYGPVKNPWDLDAVPGGSSGGSAAAVAGRLAPAATGTDTGGSIRQPAALCGLSGLKPTYGRV 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: AMIB2_MYCTU (Putative amidase amiB2 OS=Mycobacterium tuberculosis GN=amiB2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.762e-21
Identity = 67/189 (35.45%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  312 ARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            AR L  G L++  +   + +R               F +A   A+   + L+   +   PL G+PI+IKD   + G+ TT G       PAAT ++ +V  L   GAVI  KTN+P+ M+   +++  FG T NP   + T GGSSGG  A VA   +P+ +G+D  GSIRIP   CG +G +P  DR+
Sbjct:   15 ARMLADGALTAPMLLEVYLQRIERLDSHLRAYRVVQFDRARAEAEAAQQRLDAGERL--PLLGVPIAIKDDVDIAGEVTTYGSAGH--GPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWCLNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPCTWCGLFGLKPQRDRI 199          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: AMIB2_MYCBO (Putative amidase amiB2 OS=Mycobacterium bovis GN=amiB2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.762e-21
Identity = 67/189 (35.45%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  312 ARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            AR L  G L++  +   + +R               F +A   A+   + L+   +   PL G+PI+IKD   + G+ TT G       PAAT ++ +V  L   GAVI  KTN+P+ M+   +++  FG T NP   + T GGSSGG  A VA   +P+ +G+D  GSIRIP   CG +G +P  DR+
Sbjct:   15 ARMLADGALTAPMLLEVYLQRIERLDSHLRAYRVVQFDRARAEAEAAQQRLDAGERL--PLLGVPIAIKDDVDIAGEVTTYGSAGH--GPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWCLNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPCTWCGLFGLKPQRDRI 199          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ACIC17.267e-2234.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_THEEB9.492e-2236.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_AQUAE9.492e-2234.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_NATTJ1.240e-2134.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_NOCFA1.619e-2132.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
FAH2A_DANRE1.619e-2131.63Fatty-acid amide hydrolase 2-A OS=Danio rerio GN=f... [more]
GATA_SYNS92.114e-2134.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_ALHEH2.114e-2134.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
AMIB2_MYCTU2.762e-2135.45Putative amidase amiB2 OS=Mycobacterium tuberculos... [more]
AMIB2_MYCBO2.762e-2135.45Putative amidase amiB2 OS=Mycobacterium bovis GN=a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
back to top