FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6986 contig Ccv1_Contig6986:1..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SALAI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinispora arenicola (strain CNS-205) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.607e-21
Identity = 66/190 (34.74%), Postives = 93/190 (48.95%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA E+A  +  GE S+  VT A   R                  AL+ A+ +D      G+P+GPL G+P+++KD    KG  TTAG    +       +S +V  L   G V+  KTN+ +  M   ++ + FG T NP + S   GGS GG  A +A   +PL +G+D  GSIR P    GT G +PT
Sbjct:    8 SAAELAGLVARGESSAAEVTQAHLDRITAVDDRVHAFLHVDTEGALDAARAVDAR-RAAGEPLGPLAGVPVAVKDVLTTKGIPTTAGS-RILAGWRPPYDSTIVRRLRAAGTVMLGKTNMDEFAMGSSTEYSAFGPTHNPWDLSRIPGGSGGGSAAALAAYETPLSIGSDTGGSIRQPGAVTGTVGVKPT 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_GEOBB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.607e-21
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRA-AIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E+  +LK  E+SS+  T A   R  A+  Q+ + +T T   QAL +A+  D    +    + PL G+P+ +KD F  KG +TT G    +++     +   V  L E GAVI  K N  +  M   ++++ FG   NP + S T GGSSGG  A +A + +   +GTD  GSIR P+  CG  G +PT  RV
Sbjct:   10 ELHEKLKAKEVSSVEATRAMLDRIEAVDSQVNAYITVTP-EQALVQAEDADR--RIAAGEIAPLTGIPVGLKDIFVTKGIRTTCGS-RILENFVPPYDGTAVAKLKEQGAVIVGKLNQDEFAMGSSNESSYFGPCKNPWDLSCTPGGSSGGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLKPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_RHOE4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.711e-21
Identity = 65/192 (33.85%), Postives = 94/192 (48.96%), Query Frame = 3
Query:  291 TNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T  A E+A ++ + E+SS+ VT A   R A               QALE A  +D  L    +P   L G+PI++KD F      TT    + ++   A  ++ L   L   G  I  KTN+ +  M   ++N+ FG T NP + +   GGS GG  A +A + +PL +GTD  GSIR P+    T G +PT
Sbjct:    6 TLDAAELAGKIHSREVSSVEVTQAHLDRIAAVDTEYHAFLHVAGEQALEAAAAVDNSLAGGNEPASALAGVPIALKDIFTTTDMPTTCAS-KILEGWVAPYDATLTSKLRAAGIPILGKTNLDEFAMGSSTENSAFGPTRNPWDVTRIPGGSGGGSAAALASRQAPLAIGTDTGGSIRQPAAVTATVGTKPT 196          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_METCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylococcus capsulatus GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.711e-21
Identity = 68/191 (35.60%), Postives = 95/191 (49.74%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E+A  L+  E SS+ +T A   R        +    T    AL +A+  DE   L     GPL G+PI+ KD F  KG +T+ G    +    +  ++C+VE     GAV+  K N+ +  M   ++ + +G   NP NT+   GGSSGG  A VA +  P   GTD  GSIR P+  CG  G +PT  RV
Sbjct:    8 ELAAGLERREFSSVELTQAHLARIERLDPALNSFITTTPEIALAQARAADE--RLAKGEAGPLTGIPIAQKDIFCTKGVRTSCGS-RMLDSFVSPYDACVVERFNAAGAVMLGKLNMDEFAMGSSNETSYYGPVKNPWNTATVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAAFCGITGLKPTYGRV 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_LAWIP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.711e-21
Identity = 69/205 (33.66%), Postives = 99/205 (48.29%), Query Frame = 3
Query:  264 SSVELQITETNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S + L + + ++   I+R+    E++   +    A    I   +T C  E     AL  AK LD+       P  PL G+PI++KD    K   TTA     +KH     ++ +++ L   GA+I  KTN+ +  M   ++ + FG T NP NT    GGSSGG  A VA       +GTD  GSIR P+  CG  G +PT  RV
Sbjct:    3 SDIHLSLAQIHNLL-ISREKSVEEVTQACLDRIIATEPTINAFITICAEE-----ALSEAKKLDQSTP---DPKKPLWGIPIAVKDNILTKNIPTTAASC-MLKHFIPQYDAFIIQQLKNAGAIIIGKTNLDEFAMGSSTETSFFGPTYNPWNTKCVPGGSSGGSAASVAAFQCFSAIGTDTGGSIRQPAALCGCIGLKPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_GEOSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sp. (strain M21) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.711e-21
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRA-AIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E+  +LK  E+SS+  T A   R  A+  Q+ + +T T   QAL +A+  D    +    + PL G+P+ +KD F  KG +TT G    +++     +   V  L E GAVI  K N  +  M   ++++ FG   NP + S T GGSSGG  A +A + +   +GTD  GSIR P+  CG  G +PT  RV
Sbjct:   10 ELHEKLKAKEVSSVEATRAMLDRIEAVDSQVNAYITVTP-EQALVQAQDADR--RIAAGEIAPLTGVPVGLKDIFVTKGIRTTCGS-RILENFVPPYDGTAVAKLKEQGAVIVGKLNQDEFAMGSSNESSYFGPCRNPWDLSCTPGGSSGGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLKPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CYAP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 8801) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.711e-21
Identity = 70/191 (36.65%), Postives = 104/191 (54.45%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKR-AAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            S  E+ +QL   E S++ +TT   +R AAI  Q+ S L  T   +ALE AK +D+ +    + +G L G+PI IKD    KG  TT G    +++      S + + L E+GAV+  KTN+ +  M   ++N+ +  T NP +     GGSSGG  A VA +   + +G+D  GSIR P+  CG  G +PT
Sbjct:    3 SIRELHQQLINKERSAVEITTEALERIAAIEPQVKSFLCITA-DRALETAKAVDQKIAAK-EEIGLLAGIPIGIKDNMSTKGIPTTCGS-RILENFIPPYESTVTQKLQEIGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLERVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASLCGVVGLKPT 190          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SYNS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9311) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.152e-21
Identity = 67/191 (35.08%), Postives = 94/191 (49.21%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E  +QL++GE+S+  +T     R            E    +A   A  LDE     G+ + PL G+PI+IKD    KG +TT+     ++       S + + L   GAV+  KTN+ +  M G ++ + FG T NP NT    GGSSGG  A VA       +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    5 EWRQQLESGEVSARELTDHHLARIKAVDSSVHAFLEVTADRARADADRLDE-ARAAGEDLPPLAGVPIAIKDNLCTKGIRTTSSS-RMLESFVPPYESTVTDRLWRSGAVLIGKTNLDEFAMGGSTETSAFGPTANPWNTGYVPGGSSGGSAAAVAAGECMASLGSDTGGSIRQPASFCGVVGLKPTYGRV 193          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SYMTH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Symbiobacterium thermophilum GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.152e-21
Identity = 63/190 (33.16%), Postives = 92/190 (48.42%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA  + R    GELS++ +  +   R A  +              +ERAK LD   +     +GPL G+PI++KD     G +TT      +K   +  ++ +VE L   GA+I  K N+ +  M    +++ FG T NP +     GGSS G  A VA   +PL +GTD  GSIR P+   G  G +PT
Sbjct:    3 SAARLNRLFLAGELSAVEIAESALSRIAQVEPAVGAFITVAADHVIERAKKLDARRKAGDTELGPLAGVPIAVKDNICTSGMETTCAS-RILKGYVSPFDATVVERLRAAGAMIIGKANMDEFAMGSSGESSAFGVTRNPWDLERVPGGSSSGSAAAVAAGEAPLALGTDTGGSIRQPAAFTGIVGLKPT 191          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_THEP3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.035e-21
Identity = 64/187 (34.22%), Postives = 100/187 (53.48%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            E+   LK  E+S+L VT ++ +R    +     L       AL+RAK  DE ++ +G+    L G+P+ IKD    +G +TT    + +++     N+ +VE LLE G +I  K+N+ +  M   ++N+ F  T NP + S   GGSSGG  A +A   +   +G+D  GSIR P+  CG  G +PT
Sbjct:   10 ELRELLKKREVSALEVTKSYLERIKEVEPKIDALITITEDFALQRAKEADEKIK-NGEDTA-LTGIPVIIKDNISTEGIKTTCSS-KMLENYIPPYNATVVEKLLEEGVIILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPT 193          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_SALAI3.607e-2134.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_GEOBB3.607e-2135.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_RHOE44.711e-2133.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_METCA4.711e-2135.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LAWIP4.711e-2133.66Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_GEOSM4.711e-2135.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_CYAP84.711e-2136.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SYNS36.152e-2135.08Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYMTH6.152e-2133.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_THEP38.035e-2134.22Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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