FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6986 contig Ccv1_Contig6986:1..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_EUBE2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.035e-21
Identity = 66/190 (34.74%), Postives = 95/190 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            +A E+A ++K GE ++     A   +   ++   +C       +AL  AK  DE ++  GK  GPL G+P +IKD    +G  TT    + + +   T  +  VE L   GAVI  KTN+ +  M   ++ + FG T NP N     GGSSGG  A VA       +G+D  GSIR P+  CG  G +PT
Sbjct:    7 TAVELAAKIKAGETTATEAMEAVIAQIEKSEDELNCYVTFDKEKALAAAKKADEDIKA-GKLTGPLAGVPFAIKDNMCTEGMLTTCSS-KILGNFVPTYTADAVERLQNAGAVIIGKTNMDEFAMGSTTETSAFGATKNPRNPEHVPGGSSGGSAAAVAANECFAALGSDTGGSIRQPASYCGVVGLKPT 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CORDI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium diphtheriae GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.049e-20
Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA E+A ++ + E++S  VT A   R                 +AL  A  +DE L+    P   L G+P+++KD F      TT    + ++   A  ++ + + + E G  I  KTN+ +  M   ++N+ +G TLNP +   T GGS GG  A +A   +PLG+GTD  GSIR P+    T G +PT
Sbjct:   15 SAAELAEKIHSREVTSREVTQAHLDRINDVDGTLHAFLHVGVEEALAAADAVDESLDKGEAPASALAGVPLALKDVFVTTDAPTTCAS-KMLEGYVAPYDATVTKKIREAGIPILGKTNMDEFAMGSSTENSAYGPTLNPWDIERTPGGSGGGTSAALASGEAPLGIGTDTGGSIRQPAALTNTVGVKPT 203          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CLOPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.049e-20
Identity = 70/198 (35.35%), Postives = 106/198 (53.54%), Query Frame = 3
Query:  276 LQITETNSATEIARQLKTGELS-SLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            ++IT+  +A E+++++K  ELS   AV   F+          S +T     +ALE+A  +   +E       PL G+PI+IKD   VKG +TT    + ++      N+ ++E L + GA+I  KTN+ +  M   ++ + FG T NP N     GGSSGG  A VA + + + +GTD  GSIR PS  CG  G +PT
Sbjct:    1 MEITKL-TAIELSKKIKQKELSVEEAVKATFSAIKKREPYYHSYITVNE-EEALEQASKIQIAIEAGKFADSPLAGVPIAIKDNICVKGMRTTCAS-KILEDFIPPYNASVIERLKDAGAIILGKTNMDEFAMGSTTETSYFGATKNPWNIECIPGGSSGGSAAAVAAEEAFIALGTDTGGSIRQPSAFCGVTGIKPT 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_TERTT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.371e-20
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            EI+R+L+  E SS  +T  F  R        +C        A+ +AK  D  L     P   + G+P + KD F   G +TT G  + + +     N+ +VE  +  GAV+  KTN+ +  M   ++ + FG   NP +T+   GGSSGG  A VA + +P    TD  GSIR P+  CG  G +PT  RV
Sbjct:    8 EISRKLQAKEFSSEEITRYFLDRIKQQDPTYNCYVTVTEELAMAQAKAADARLAAGNAPT--MCGVPFAHKDIFCTNGVKTTCGS-KMLDNFVPPYNATVVENYINEGAVMLGKTNMDEFAMGSSNETSYFGPVKNPWDTNCVPGGSSGGSAAAVAARMAPGATATDTGGSIRQPAALCGITGIKPTYGRV 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_RENSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.371e-20
Identity = 65/190 (34.21%), Postives = 100/190 (52.63%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA  +A +L +GE++S+ VT A+  R A+     +        +AL  A  +D      GK +  L G+PI+IKD    KG+ TTAG  + ++   +  ++ ++E +      I  KTN+ +  M   ++++ FG T NP + +   GGS GG  A VA   +PL +GTD  GSIR P    GT G +PT
Sbjct:    8 SAAALAAKLASGEVTSVQVTQAYLDRIALVDGELNAFLHLNAEEALRVAAEVDAD-RAAGKELHELAGVPIAIKDLIVTKGQPTTAGS-KILEGWISPYDATVIEKIRAAKMPILGKTNLDEFAMGSSTEHSAFGPTRNPWDLTRIPGGSGGGSAAAVAAFEAPLALGTDTGGSIRQPGAVTGTVGVKPT 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CHLSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.371e-20
Identity = 68/201 (33.83%), Postives = 99/201 (49.25%), Query Frame = 3
Query:  282 ITETNSATEIARQ--LKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +TE +  T  A Q  L  G+++++ +T A   R    +             AL  A+  DE  +  G+ +GPL G+PI+IKD     G  TTAG    +       N+ ++E L+  GAV+  K N  +  M   ++N+ +  T NP + +   GGSSGG  A VA    P  +GTD  GSIR P+  CG  G +PT  RV
Sbjct:    1 MTELHHLTVTAAQAALAAGDITAVELTEACLARINATEPTIRAFLHLTPDAALAAARAADERRQ-QGRSLGPLDGIPIAIKDVICTDGVPTTAGS-RILAGFRPPYNATVIERLVAAGAVLVGKLNCDEFAMGSSTENSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRV 199          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CHLAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.371e-20
Identity = 68/201 (33.83%), Postives = 99/201 (49.25%), Query Frame = 3
Query:  282 ITETNSATEIARQ--LKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +TE +  T  A Q  L  G+++++ +T A   R    +             AL  A+  DE  +  G+ +GPL G+PI+IKD     G  TTAG    +       N+ ++E L+  GAV+  K N  +  M   ++N+ +  T NP + +   GGSSGG  A VA    P  +GTD  GSIR P+  CG  G +PT  RV
Sbjct:    1 MTELHHLTVTAAQAALAAGDITAVELTEACLARINATEPTIRAFLHLTPDAALAAARAADERRQ-QGRSLGPLDGIPIAIKDVICTDGVPTTAGS-RILAGFRPPYNATVIERLVAAGAVLVGKLNCDEFAMGSSTENSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRV 199          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_THISH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.790e-20
Identity = 71/192 (36.98%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRA-AIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E++  L  GE SS+ +T  F KR  A+   L S +T T   QAL +AK  D+     G+  GPL G+P++ KD F   G +TT G  + + +  A  ++ +VE     G  +  KTN+ +  M   ++ +  G   NP +T+   GGSSGG  A VA + +P   GTD  GSIR P+  CG  G +PT  RV
Sbjct:    8 ELSAALTKGECSSVELTEHFLKRIEALDGGLNSFVTVTA-EQALAQAKAADDR-RARGE-AGPLTGVPMAQKDIFCTDGVRTTCGS-KMLDNFIAPYDATVVERFKAEGCPMLGKTNMDEFAMGSSNETSFHGPVKNPWDTARVPGGSSGGSAAAVAARLTPSATGTDTGGSIRQPAALCGITGLKPTYGRV 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_FRASC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Frankia sp. (strain CcI3) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.790e-20
Identity = 63/190 (33.16%), Postives = 94/190 (49.47%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA   A  +  G LS++  T A   R A   +            AL  A+ +D+     G+ +GPL G+P+++KD F  +G  TT G    ++      ++ +V  L     V+  K N+ +  M   ++N+ FG T NP + +   GGSSGG  A VA   +PL +GTD  GSIR P+  CG  G +PT
Sbjct:   21 SAAATAAAIAVGRLSAVEATRAALDRIAKVDETVHAFLHVDADGALAAARSVDDR-RAAGERLGPLAGVPLALKDVFTTRGMPTTCGS-RILEGWHPPYDATVVSRLRAADVVLLGKANMDEFAMGSSTENSAFGPTRNPWDVTRIPGGSSGGSAAAVAAFEAPLALGTDTGGSIRQPAALCGLVGVKPT 208          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_DEIGD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus geothermalis (strain DSM 11300) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.790e-20
Identity = 66/199 (33.17%), Postives = 111/199 (55.78%), Query Frame = 3
Query:  282 ITETNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            ++E ++AT++AR ++  E +  A+  A  +RA  A+ L + ++  +  +A E+A  +   L+  G+ + PL G+PI +KD   V G +TT G    + +  +  ++  VE L   GAVI  K N+ +  M   ++++ +G TLNP +     GGSSGG    VA   +P+ +G+D  GS+R P+   G YG +PT  RV
Sbjct:    1 MSECSTATDLARAVQARETTPQALLEAARRRAEAARDLNALIS--LNDRADEQAARVQVRLDA-GETL-PLAGVPIVVKDNLNVIGTRTTCGS-RILANYVSPYDATAVERLTGAGAVIIGKANMDEFAMGSSTESSAWGPTLNPWDRERVPGGSSGGSAVAVAANLTPVALGSDTGGSVRQPAAFTGIYGLKPTYGRV 194          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_EUBE28.035e-2134.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_CORDI1.049e-2032.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOPH1.049e-2035.35Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_TERTT1.371e-2034.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_RENSM1.371e-2034.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_CHLSY1.371e-2033.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLAA1.371e-2033.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_THISH1.790e-2036.98Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_FRASC1.790e-2033.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_DEIGD1.790e-2033.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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