FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_NEIMB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup B GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.577e-14
Identity = 54/185 (29.19%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  312 ARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            ++Q+   EL+S  +     K  A+   +T    +T     L  A+  DE +         L G+P++ KD F   G ++     + + +  +   + +V+ LL+ G V   +TN+ +  M   ++N+ +G   NP N     GGSSGG  A+VA + +P  +G+D  GSIR P+  CG  G +PT
Sbjct:   15 SKQISAVELASAYLAAIAEKNPALNGYITIDQDKT-----LAEARAADERIAQGN--ASALTGVPVAYKDIFCQTGWRSACAS-KMLDNFISPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNLEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPT 191          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_FRATO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.577e-14
Identity = 53/187 (28.34%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            ++  +L +GE+S++ +T  +  +     +  + +     ++AL+ A+  D  +   GK  G L G+PI  KD F  KG +TTA   + + +  A  +S + +   + G V   K N+ +  M   ++ + +G   NP +     GGSSGG  A VA   +P+  G+D  GS+R P+  CG    +P+
Sbjct:    6 KLRARLDSGEISAVELTKEYLAKIKEQDKRINSIITLCEAEALKEAEDADAIISA-GKQ-GLLTGIPILHKDLFCTKGIRTTAAS-KMLDNFVAPYDSTVTKNCKDQGMVTLGKLNMDEFAMGSTNEYSYYGAVSNPWDLERVPGGSSGGSAAAVAAGFAPISTGSDTGGSVRQPASFCGLTAMKPS 189          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_FRATH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Francisella tularensis subsp. holarctica (strain LVS) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.577e-14
Identity = 53/187 (28.34%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            ++  +L +GE+S++ +T  +  +     +  + +     ++AL+ A+  D  +   GK  G L G+PI  KD F  KG +TTA   + + +  A  +S + +   + G V   K N+ +  M   ++ + +G   NP +     GGSSGG  A VA   +P+  G+D  GS+R P+  CG    +P+
Sbjct:    6 KLRARLDSGEISAVELTKEYLAKIKEQDKRINSIITLCEAEALKEAEDADAIISA-GKQ-GLLTGIPILHKDLFCTKGIRTTAAS-KMLDNFVAPYDSTVTKNCKDQGMVTLGKLNMDEFAMGSTNEYSYYGAVSNPWDLERVPGGSSGGSAAAVAAGFAPISTGSDTGGSVRQPASFCGLTAMKPS 189          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_FRATF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.577e-14
Identity = 53/187 (28.34%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            ++  +L +GE+S++ +T  +  +     +  + +     ++AL+ A+  D  +   GK  G L G+PI  KD F  KG +TTA   + + +  A  +S + +   + G V   K N+ +  M   ++ + +G   NP +     GGSSGG  A VA   +P+  G+D  GS+R P+  CG    +P+
Sbjct:    6 KLRARLDSGEISAVELTKEYLAKIKEQDKRINSIITLCEAEALKEAEDADAIISA-GKQ-GLLTGIPILHKDLFCTKGIRTTAAS-KMLDNFVAPYDSTVTKNCKDQGMVTLGKLNMDEFAMGSTNEYSYYGAVSNPWDLERVPGGSSGGSAAAVAAGFAPISTGSDTGGSVRQPASFCGLTAMKPS 189          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_DESAP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulforudis audaxviator (strain MP104C) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.577e-14
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  429 ALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            AL +A  +D  L+ +G+ + PL G+P +IKD   ++G   T    + + +     ++ +VE L +   VI  KTN+ +  M   ++++ F  T NP +     GGSSGG  A VA   +   +G+D  GSIR P+  CG  G +PT
Sbjct:   51 ALRQAAAVDRELQ-NGRELPPLAGIPFAIKDNICLRGLPATCSS-KILHNWVPPYDATVVEKLKDQQTVILGKTNMDEFAMGSSTEHSAFFTTRNPWDPKRVPGGSSGGSAAAVAAGSAICALGSDTGGSIRQPASFCGVVGMKPT 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BACWK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus weihenstephanensis (strain KBAB4) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.577e-14
Identity = 57/195 (29.23%), Postives = 89/195 (45.64%), Query Frame = 3
Query:  294 NSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +S +E+ ++L   E+S   +     KR +  +             A  +AK LD   ++  +  G L G+PI +KD     G +TT    + + +     ++ +V+ L     V   K N+ +  M   ++N+ F  T NP N     GGSSGG  A VA       +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    6 HSVSELHKKLNNKEISVTDLVEESYKRISDVEDNVKAFLTLDEENARAKAKELDA--KIGAEDNGLLFGMPIGVKDNIVTNGLRTTCAS-KILANFDPIYDATVVQKLKAADTVTIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_PSEA7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa (strain PA7) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVT-TAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            EIAR L     S+  +T T   +   +  QL S ++ T    A+ +AK  DE    +G+  G L G PI+ KD F  +G +T+ G  + + +  +  ++ +VE L   G V   K N+ +  M   + ++ +G   NP +     GGSSGG  A VA +  P   GTD  GSIR P+      G +PT  RV
Sbjct:    9 EIARALADKRFSAEELTRTLLGRIRQLDPQLNSFISVTD-DLAIAQAKAADER-RANGEN-GALLGAPIAHKDLFCTQGVRTSCGS-KMLDNFVSPYDATVVEKLAAAGTVTLGKLNMDEFAMGSSNQSSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRV 196          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_FRATW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 53/187 (28.34%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            ++  +L +GE+S++ +T  +  +     +  + +     ++AL+ A+  D  +   GK  G L G+PI  KD F  KG +TTA   + + +  A  +S + +   + G V   K N+ +  M   ++ + +G   NP +     GGSSGG  A VA   +P+  G+D  GS+R P+  CG    +P+
Sbjct:    6 KLRARLDSGEISAVELTKEYLAKIKEQDKRINSVITLCEAEALKEAEDADAIISA-GKQ-GLLTGIPILHKDLFCTKGIRTTAAS-KMLDNFVAPYDSTVTKNCKDQGMVTLGKLNMDEFAMGSTNEYSYYGAVSNPWDLERVPGGSSGGSAAAVAAGFAPISTGSDTGGSVRQPASFCGLTAMKPS 189          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_FRATT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Francisella tularensis subsp. tularensis GN=gatA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 53/187 (28.34%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            ++  +L +GE+S++ +T  +  +     +  + +     ++AL+ A+  D  +   GK  G L G+PI  KD F  KG +TTA   + + +  A  +S + +   + G V   K N+ +  M   ++ + +G   NP +     GGSSGG  A VA   +P+  G+D  GS+R P+  CG    +P+
Sbjct:    6 KLRARLDSGEISAVELTKEYLAKIKEQDKRINSVITLCEAEALKEAEDADAIISA-GKQ-GLLTGIPILHKDLFCTKGIRTTAAS-KMLDNFVAPYDSTVTKNCKDQGMVTLGKLNMDEFAMGSTNEYSYYGAVSNPWDLERVPGGSSGGSAAAVAAGFAPISTGSDTGGSVRQPASFCGLTAMKPS 189          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_FRATM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 53/187 (28.34%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            ++  +L +GE+S++ +T  +  +     +  + +     ++AL+ A+  D  +   GK  G L G+PI  KD F  KG +TTA   + + +  A  +S + +   + G V   K N+ +  M   ++ + +G   NP +     GGSSGG  A VA   +P+  G+D  GS+R P+  CG    +P+
Sbjct:    6 KLRARLDSGEISAVELTKEYLAKIKEQDKRINSVITLCEAEALKEAEDADAIISA-GKQ-GLLTGIPILHKDLFCTKGIRTTAAS-KMLDNFVAPYDSTVTKNCKDQGMVTLGKLNMDEFAMGSTNEYSYYGAVSNPWDLERVPGGSSGGSAAAVAAGFAPISTGSDTGGSVRQPASFCGLTAMKPS 189          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_NEIMB5.577e-1429.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_FRATO5.577e-1428.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_FRATH5.577e-1428.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_FRATF5.577e-1428.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_DESAP5.577e-1433.56Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_BACWK5.577e-1429.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_PSEA77.284e-1432.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_FRATW7.284e-1428.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_FRATT7.284e-1428.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_FRATM7.284e-1428.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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