FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6986 contig Ccv1_Contig6986:1..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_STRSV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus sanguinis (strain SK36) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 56/190 (29.47%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  309 IARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            + +++   EL+   +     + AA+   +T    E +   A   AK +D            + G+P+++KD    KG  TTA   + + +     ++  VE L     +I  KTN+ +  M G S+N+ F  T N  ++S   GGSSGG    VA     L +G+D  GSIR P+   G  G +PT  RV
Sbjct:   16 VKKEISAVELTQATLADIKEREAAVDSFITVSEEEALAQAAALDAKGIDAD--------NLMSGIPLAVKDNISTKGILTTAAS-KILYNYKPIFDATSVEKLYGKDMIIVGKTNMDEFAMGGSSENSYFKTTKNAWDSSKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPASFNGVVGLKPTYGRV 196          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_METTH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanobacterium thermoautotrophicum GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 50/168 (29.76%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  363 FAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            F KR        +   E    +A++RA+ +D  +   GK  G L GL I +K    V+    +A   + +++   + ++ ++  + E   +I   TN+ +      ++ + FG T NP       GGSSGG  A VA     L +G+D  GSIR P+  CG  GF+PT
Sbjct:   27 FLKRIEAKNDDINAFLEVRGEEAIKRAEEIDARIA-SGKETGKLAGLVIGVKSNINVEDFNVSAAS-KTLENYTGSYDATVIRRIKEEDGIIIGMTNMDEFAAGSSTETSFFGPTDNPAAPGRIPGGSSGGSAAAVAAGMCDLALGSDTGGSIRNPASHCGVMGFKPT 192          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_HELPJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Helicobacter pylori J99 GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  438 RAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            RA  L+ Y++          G+PI IKD   VKG + T    + ++   A  ++  +E L + G   +  +N+ +  M   ++++ +G T NP + ++  GGSSGG  A VA   +   +G+D  GSIR P+  CG  G +PT  RV
Sbjct:   27 RASDLNAYIKAPSLNGASAKGVPILIKDNISVKGWEITCSS-KILEGYVAPYHASAIENLHQNGMAGFGLSNMDEFAMGSTTESSCYGITKNPRDKNIVPGGSSGGSAAAVAGGLTVAALGSDTGGSIRQPASYCGCVGLKPTYGRV 172          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CAMJR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni (strain RM1221) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 47/145 (32.41%), Postives = 77/145 (53.10%), Query Frame = 3
Query:  444 KYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            ++LD+ L + G+      G+P++IKD   VKG + T+       + A  + S +V +    G   + + N+ +  M   + ++ +G+TLNP N     GGSSGG  A VA   +   +G+D  GS+R P+  CG  GF+P+  RV
Sbjct:   38 QFLDKDLSVSGE------GVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKAN-GFSPFGRCNMDEFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRV 175          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CAMJ8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 47/145 (32.41%), Postives = 77/145 (53.10%), Query Frame = 3
Query:  444 KYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            ++LD+ L + G+      G+P++IKD   VKG + T+       + A  + S +V +    G   + + N+ +  M   + ++ +G+TLNP N     GGSSGG  A VA   +   +G+D  GS+R P+  CG  GF+P+  RV
Sbjct:   38 QFLDKDLSVSGE------GVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKAN-GFSPFGRCNMDEFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRV 175          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_AERPE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Aeropyrum pernix GN=gatA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = 3
Query:  492 LHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            L G+ + +KD        TTAG    +       N+ +VE LL  GA+I  KTN+ +  M    + + FG T NP + S   GGSS G GA +A+      +G+D  GS+R+P+    T G +PT
Sbjct:   70 LEGVVVGVKDNISTSFLPTTAGS-RMLDGYIPPFNATVVERLLMEGAIIIGKTNLDEFAMGSTGEFSAFGPTRNPWDLSRVPGGSSSGSGACLAYGACDAALGSDTGGSVRLPAAYTATVGLKPT 193          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: AMIA2_MYCTU (Putative amidase amiA2 OS=Mycobacterium tuberculosis GN=amiA2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 59/192 (30.73%), Postives = 86/192 (44.79%), Query Frame = 3
Query:  303 TEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            T++  QL T  ++S  +     +   ++Q   +     +   AL  A   D+          PL G+PI++KD   V G  T  G   ++    AT++  +V  L   GAVI  KTN  +      +    FG T NP +   T GGSSGG  A VA       +G+D AGSIRIP+      G +P   R+
Sbjct:   24 TDLLYQLATRAVTSEELVRRSLRAIDVSQPTLNAFRVVLTESALADAAAADK--RRAAGDTAPLLGIPIAVKDDVDVAGVPTAFGTQGYVA--PATDDCEVVRRLKAAGAVIVGKTNTCELGQWPFTSGPGFGHTRNPWSRRHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSIRIPAAWTHLVGIKPQRGRI 211          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: AMIA2_MYCBO (Putative amidase amiA2 OS=Mycobacterium bovis GN=amiA2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 59/192 (30.73%), Postives = 86/192 (44.79%), Query Frame = 3
Query:  303 TEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            T++  QL T  ++S  +     +   ++Q   +     +   AL  A   D+          PL G+PI++KD   V G  T  G   ++    AT++  +V  L   GAVI  KTN  +      +    FG T NP +   T GGSSGG  A VA       +G+D AGSIRIP+      G +P   R+
Sbjct:   24 TDLLYQLATRAVTSEELVRRSLRAIDVSQPTLNAFRVVLTESALADAAAADK--RRAAGDTAPLLGIPIAVKDDVDVAGVPTAFGTQGYVA--PATDDCEVVRRLKAAGAVIVGKTNTCELGQWPFTSGPGFGHTRNPWSRRHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSIRIPAAWTHLVGIKPQRGRI 211          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: HYIN_RHIRD (Indoleacetamide hydrolase OS=Rhizobium radiobacter GN=tms2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.054e-13
Identity = 60/195 (30.77%), Postives = 81/195 (41.54%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRVP 881
            S  +    LK  + S L +      R   A+ L + L  T +      AK +D     HG     L G+P+  K         T+A     I H      S + E L   GA+     N+ +      S+N   G   NP N  L  GGSSGG  A VA +    G+GTD   S+R+P+  CG  GF+PT  R P
Sbjct:    6 SLAQSLEHLKRKDYSCLELVETLIARCEAAKSLNALLA-TDWDGLRRSAKKIDR----HGNAGVGLCGIPLCFKANIATGVFPTSAATPALINHLPKIP-SRVAERLFSAGALPGASGNMHELSFGITSNNYATGAVRNPWNPDLIPGGSSGGVAAAVASRLMLGGIGTDTGASVRLPAALCGVVGFRPTLGRYP 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: HYIN_AGRT9 (Indoleacetamide hydrolase OS=Agrobacterium tumefaciens (strain 15955) GN=tms2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.054e-13
Identity = 60/195 (30.77%), Postives = 81/195 (41.54%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRVP 881
            S  +    LK  + S L +      R   A+ L + L  T +      AK +D     HG     L G+P+  K         T+A     I H      S + E L   GA+     N+ +      S+N   G   NP N  L  GGSSGG  A VA +    G+GTD   S+R+P+  CG  GF+PT  R P
Sbjct:    6 SLAQSLEHLKRKDYSCLELVETLIARCEAAKSLNALLA-TDWDGLRRSAKKIDR----HGNAGVGLCGIPLCFKANIATGVFPTSAATPALINHLPKIP-SRVAERLFSAGALPGASGNMHELSFGITSNNYATGAVRNPWNPDLIPGGSSGGVAAAVASRLMLGGIGTDTGASVRLPAALCGVVGFRPTLGRYP 194          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_STRSV6.167e-1329.47Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METTH6.167e-1329.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_HELPJ6.167e-1331.97Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_CAMJR6.167e-1332.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CAMJ86.167e-1332.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_AERPE6.167e-1335.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
AMIA2_MYCTU6.167e-1330.73Putative amidase amiA2 OS=Mycobacterium tuberculos... [more]
AMIA2_MYCBO6.167e-1330.73Putative amidase amiA2 OS=Mycobacterium bovis GN=a... [more]
HYIN_RHIRD8.054e-1330.77Indoleacetamide hydrolase OS=Rhizobium radiobacter... [more]
HYIN_AGRT98.054e-1330.77Indoleacetamide hydrolase OS=Agrobacterium tumefac... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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