FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6986 contig Ccv1_Contig6986:1..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CHLPN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydia pneumoniae GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.790e-20
Identity = 63/190 (33.16%), Postives = 100/190 (52.63%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA E+A+ +  GEL++  VT  F  R   A+            QALE+A+ +D+     G+P+G L G+P+ IKD   V G +TT      +++     ++ +VE + +   +I  K N+ +  M   +  + F  T NP + S   GGSSGG  A V+ +  P+ +G+D  GSIR P+  CG  GF+P+
Sbjct:    5 SALELAKAVTLGELTATGVTQHFFHRIEEAEGQVGAFISLCKEQALEQAELIDKKRS-RGEPLGKLAGVPVGIKDNIHVTGLKTTCAS-RVLENYQPPFDATVVERIKKEDGIILGKLNMDEFAMGSTTLYSAFHPTHNPWDLSRVPGGSSGGSAAAVSARFCPVALGSDTGGSIRQPAAFCGVVGFKPS 192          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.790e-20
Identity = 69/194 (35.57%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D  L       GPL GLPI+ KD F  +G ++TAG  + + + A+  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +TS   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNA-FVHVDAELTLAQAKAADAALA--NGEAGPLAGLPIAHKDVFVTRGWRSTAGS-KMLANYASPFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURP1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1710b) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.790e-20
Identity = 69/194 (35.57%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D  L       GPL GLPI+ KD F  +G ++TAG  + + + A+  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +TS   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNA-FVHVDAELTLAQAKAADAALA--NGEAGPLAGLPIAHKDVFVTRGWRSTAGS-KMLANYASPFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURP0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1106a) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.790e-20
Identity = 69/194 (35.57%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D  L       GPL GLPI+ KD F  +G ++TAG  + + + A+  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +TS   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNA-FVHVDAELTLAQAKAADAALA--NGEAGPLAGLPIAHKDVFVTRGWRSTAGS-KMLANYASPFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: HYIN1_BRAJA (Indoleacetamide hydrolase OS=Bradyrhizobium japonicum GN=bam PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.338e-20
Identity = 62/195 (31.79%), Postives = 99/195 (50.77%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRVP 881
            SA + A  +++G +S++    A   R        + +   +  +AL+ A   D+     G  +G LHG+PI+IK+    +G+    G V   K   A  ++ +V  L + GA++   TN P+    G +DN + G TLNP +  +T GGSSGG G+ VA     +  G D+ GS+R P+ C G    +PT  R+P
Sbjct:   61 SAVDTAAAIRSGAISAVETVEAHLDRMRAVNPRLNAVVVDLSKEALKAAHAADKQ-RAKGGELGLLHGVPITIKENVDYEGRPNFNG-VPANKDYIAPSDAPVVRNLKKAGAIVIGLTNTPEFSFRGFTDNPLHGLTLNPWDPDITCGGSSGGAGSAVAAGIGTIAHGNDIGGSLRWPAHCNGVATIKPTQGRIP 253          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_THEPX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.338e-20
Identity = 63/187 (33.69%), Postives = 99/187 (52.94%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            E+   LK  E+S+L VT ++ +R    +     L       AL++AK  DE ++  G+    L G+P+ IKD    +G +TT    + +++     N+ +VE LLE G +I  K+N+ +  M   ++N+ F  T NP + S   GGSSGG  A +A   +   +G+D  GSIR P+  CG  G +PT
Sbjct:   10 ELRELLKKREVSALEVTKSYLERIKEVEPKIDALVTITEDFALQKAKEADEKIK-KGEDTA-LTGIPVIIKDNISTEGIKTTCSS-KMLENYIPPYNATVVEKLLEEGVIILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPT 193          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_DESAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.338e-20
Identity = 68/194 (35.05%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TEI   L T E+++     A  ++ A ++  T  L      +AL++A+ +D       KP   L G+P+ IKD     G  TTAG  + ++      +S  V  L E GA+I  K N+ +  M   ++N+ +  T NP + S   GGSSGG GA VA       +GTD  GSIR+P+  CG  G +PT  RV
Sbjct:    8 SLTEIHAMLMTKEVTATEAVKACLEQIAKSEPETKALLHICNDEALKQAEEMDAAGPDASKP---LWGVPVVIKDALATNGIPTTAGS-KILEGFTPFYDSTAVAKLKEAGAIIVGKANMDEFAMGSTTENSAYQTTTNPWDASRVPGGSSGGSGATVAAGQCYAALGTDTGGSIRLPASFCGCVGVKPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CARHZ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.338e-20
Identity = 66/191 (34.55%), Postives = 105/191 (54.97%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTA-FAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA EI  ++K  E+S++ V  A F +  A+  ++ + +T T     L+ A+ +DE +   G+  GPL G+P++IKD     G +TT    + +++     ++ +VE L E GAV   KTN+ +  M   ++N+ F  T NP +     GGSSGG  A VA   + + +G+D  GSIR P+  CG  G +PT
Sbjct:    7 SAKEITEKIKAKEISAVEVAKATFDRIEAVEPKIQAYVTVTR-ELGLKMAREVDEKIA-RGEDPGPLAGVPVAIKDNMSTAGIRTTCSS-KILENYIPPYDATVVEKLKEAGAVFTGKTNLDEFAMGSSTENSRFFPTRNPWDLERVPGGSSGGSAASVAAGEAVVALGSDTGGSIRQPAAFCGIVGLKPT 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_PROMM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9313) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.053e-20
Identity = 66/191 (34.55%), Postives = 95/191 (49.74%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E  +QLK GE+S+  +T     R A+         +    +A   A  +DE L   G+ + PL G+P++IKD    KG +TT      ++       S + E L + GAV+  KTN+ +  M   ++ + FG T NP + S   GGSSGG  A VA       +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    5 EWRQQLKLGEVSARELTDHQLARIAVVDPTLHAFLDITADRARADADRIDEALAA-GESLPPLAGVPLAIKDNLCTKGIRTTCSS-RMLETFVPPYESTVTERLWQAGAVLLGKTNLDEFAMGSSTETSAFGATSNPWDISRVPGGSSGGSAAAVAAGECMAALGSDTGGSIRQPASFCGVVGLKPTYGRV 193          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CHLAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.053e-20
Identity = 66/186 (35.48%), Postives = 89/186 (47.85%), Query Frame = 3
Query:  321 LKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            L  GEL+++ +T A   R    +             AL  A+  DE     G+ + PL G+PI IKD     G  TTAG    +       N+ ++E LL  G V+  K N  +  M   ++N+ +  T NP +TS   GGSSGG  A VA    P  +GTD  GSIR P+  CG  G +PT  RV
Sbjct:   16 LAAGELTAVELTEACLARINATEPQIRAFLHLTPEAALAAARAADERRR-RGQALSPLDGIPIGIKDVICTNGVPTTAGS-RILAGFRPPYNATVIERLLAAGTVLIGKLNCDEFAMGSSTENSAYQITTNPWDTSRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRV 199          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CHLPN1.790e-2033.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURPS1.790e-2035.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP11.790e-2035.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP01.790e-2035.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
HYIN1_BRAJA2.338e-2031.79Indoleacetamide hydrolase OS=Bradyrhizobium japoni... [more]
GATA_THEPX2.338e-2033.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_DESAD2.338e-2035.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CARHZ2.338e-2034.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_PROMM3.053e-2034.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_CHLAD3.053e-2035.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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