FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6986 contig Ccv1_Contig6986:1..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_UNCTG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 52/187 (27.81%), Postives = 101/187 (54.01%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            ++  ++++G++ S+ +  A  KR            +    ++L++A   D+ ++  G   G L G+PI IKD   +KG+  T+   +++++  +  ++ ++E L E G +   +TN+ +  M G ++ +++ +T NP N     GGSSGG  A V+    P  +G+D  GSIR P+  CG  G++P+
Sbjct:   11 DLCEKIRSGQIKSIEIVKACFKRIKETDPKVKAFLKLNEERSLKQAAQSDDKIKT-GAECGSLEGVPIGIKDNIMIKGESMTSAS-KYLENYISPYDAAVIEKLKEAGVIFVGRTNMDEFAMGGSTETSVYQKTANPWNIDYIPGGSSGGSAAAVSSGMVPFALGSDTGGSIRQPAGFCGIVGYKPS 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_PELUB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelagibacter ubique GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = 3
Query:  303 TEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            TE+ + +K  ++SS   T AF  R   ++ L + +TE  FS AL +AK  D+      K    L G+PI++KD F  K  +TTAG  + + +      S + + +   GA++  K N  +  M   ++ + FG   +P +  L  GGSSGG  + +A   +P+ +GTD  GSIR P+   GT G +PT
Sbjct:   10 TELVKNIKDKKISSEETTKAFIDRGEKSRDLNTYITED-FSNALLKAKSFDQKPNFDLK----LPGVPIAVKDLFCTKDVKTTAGS-KILNNFIPPYESTVTQNIWNEGAILLGKLNCDEFAMGSSNETSFFGNVQSPIDKGLVPGGSSGGSASALAANLTPITIGTDTGGSIRQPASFTGTVGLKPT 191          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_METBF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 59/151 (39.07%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  414 TMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T+  +ALE+AK +D  +E H    GPL G+PI+IKD   V G   + G  + ++      N+ ++E LL  GAVI  KTN+ +  M   ++ + FG T NP +     GGSSGG  A+VA   +P  +G+D  GS+R P+  CG  G +PT
Sbjct:   40 TVSEKALEQAKKID--VEGHN---GPLAGVPIAIKDNISVVGLPNSCGS-KILEDYIPPFNAYVIEKLLAAGAVILGKTNMDEFAMGSSTETSYFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPT 184          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CHLCH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium chlorochromatii (strain CaD3) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 64/197 (32.49%), Postives = 102/197 (51.78%), Query Frame = 3
Query:  288 ETNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            + +S TE+  QL  G L    V  ++ +R   A++    +T     +ALERA+ LD  L   G  VG L GLP++IKD   +KG++ T        + +  + + ++ +  E  A+   KTN+ +  M   ++N+ FG   NP + S   GGSSGG  A VA   + + +G+D  GS+R P+  C   G +PT  R+
Sbjct:    2 QLSSYTELREQLLAGSLRCEEVVRSYLERIDAAREDNIFIT-VFHERALERARMLDRKLA-EGGTVGKLFGLPMAIKDNIAMKGERLTCASKILENYESVFDATVILRLEAE-DAIFLGKTNMDEFAMGSSNENSAFGNVPNPFDKSRVPGGSSGGSAAAVAANLALVALGSDTGGSVRQPAGFCDIVGLKPTYGRI 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei (strain SAVP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 69/194 (35.57%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D  L       GPL GLPI  KD F  +G ++TAG  + + + A+  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +TS   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNA-FVHVDAELTLAQAKAADAALA--NGEAGPLAGLPIVHKDVFVTRGWRSTAGS-KMLANYASPFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 69/194 (35.57%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D  L       GPL GLPI  KD F  +G ++TAG  + + + A+  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +TS   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNA-FVHVDAELTLAQAKAADAALA--NGEAGPLAGLPIVHKDVFVTRGWRSTAGS-KMLANYASPFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURM9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei (strain NCTC 10229) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 69/194 (35.57%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D  L       GPL GLPI  KD F  +G ++TAG  + + + A+  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +TS   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNA-FVHVDAELTLAQAKAADAALA--NGEAGPLAGLPIVHKDVFVTRGWRSTAGS-KMLANYASPFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURM7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei (strain NCTC 10247) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 69/194 (35.57%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D  L       GPL GLPI  KD F  +G ++TAG  + + + A+  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +TS   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNA-FVHVDAELTLAQAKAADAALA--NGEAGPLAGLPIVHKDVFVTRGWRSTAGS-KMLANYASPFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: FAAH2_HUMAN (Fatty-acid amide hydrolase 2 OS=Homo sapiens GN=FAAH2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 58/201 (28.86%), Postives = 108/201 (53.73%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYL------ELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRVP 881
            S  ++A+ ++  ++  + V  A+  R      + + + +  F +A++ A  +D+ L      E   +   P  G+P+++K+ FQ++G   ++G +   +   A  ++ +V +L   GA+    TN  +  M  +S N I+GR+ NP++     GGSSGGEG  +A   S +GVG+D+ GSIR+P+   G +G +P+   VP
Sbjct:   52 SGMQLAKLIRQRKVKCIDVVQAYINRIKDVNPMINGIVKYRFEEAMKEAHAVDQKLAEKQEDEATLENKWPFLGVPLTVKEAFQLQGMPNSSGLMNR-RDAIAKTDATVVALLKGAGAIPLGITNCSELCMWYESSNKIYGRSNNPYDLQHIVGGSSGGEGCTLAAACSVIGVGSDIGGSIRMPAFFNGIFGHKPSPGVVP 251          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SYNP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.208e-20
Identity = 66/185 (35.68%), Postives = 101/185 (54.59%), Query Frame = 3
Query:  315 RQLKTGELSSLAVTT-AFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            +QL   E S++ + T  FA   A+  ++ + LT T   QAL +A  +D  +   G+ +G L G+PI+IKD    KG QTT      ++    T  S + + L E GA++  KTN+ +  M   ++N+ +  T NP + +   GGSSGG  A VA   +P+ +G+D  GSIR P+  CG  G +PT
Sbjct:    9 QQLIAKERSAVEILTETFAHIEAVEPKVKAFLTLTK-EQALAQAAQVDAKIAA-GETIGLLEGIPIAIKDNLCTKGIQTTCAS-RILEGFVPTYESTVTQELQEAGAIMVGKTNLDEFAMGSSTENSGYQVTGNPWDVTRVPGGSSGGSAAAVAAGEAPIALGSDTGGSIRQPASLCGVVGLKPT 190          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_UNCTG3.988e-2027.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=U... [more]
GATA_PELUB3.988e-2033.51Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METBF3.988e-2039.07Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CHLCH3.988e-2032.49Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURMS3.988e-2035.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURMA3.988e-2035.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURM93.988e-2035.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURM73.988e-2035.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
FAAH2_HUMAN3.988e-2028.86Fatty-acid amide hydrolase 2 OS=Homo sapiens GN=FA... [more]
GATA_SYNP25.208e-2035.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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