FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6986 contig Ccv1_Contig6986:1..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_METBU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcoides burtonii (strain DSM 6242) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.208e-20
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  429 ALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            AL+ AK +D+     G+  GPL G+PI+IKD    KG  TT    + ++      ++ ++E L E GAVI  KTN+ +  M   ++++ +G TLNP +     GGSSGG  A+VA   +P+ +G+D  GS+R P+  CG  G +PT
Sbjct:   45 ALDTAKMVDK-----GEVAGPLAGVPIAIKDNISTKGLATTCSS-KILEGYVPPYDAHVIERLKEAGAVIIGKTNMDEFAMGTSTESSCYGVTLNPWDHERVPGGSSGGSAAVVAAGEAPISLGSDTGGSVRCPAAFCGVVGLKPT 184          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURXL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia xenovorans (strain LB400) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.208e-20
Identity = 68/194 (35.05%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A  L + + +      L +AK  D  L  H    GPL GLPI+ KD F  KG ++TAG  + + +  +  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +     GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALTARECSAVELAQLYLKRIEAANSLNAFI-QVDPDLTLAQAKAADALL--HTGHAGPLVGLPIAHKDVFVTKGWRSTAGS-KMLSNYESPFDATVVARLQNAGMVCVGKTNMDEFAMGSSNENSYFGPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURP6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 668) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.208e-20
Identity = 69/194 (35.57%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D  L       GPL GLPI+ KD F  +G ++TAG  + + + A+  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +TS   GGSSGG  A VA   +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNA-FVHVDAELTLAQAKAADAALA--NGEAGPLAGLPIAHKDVFVTRGWRSTAGS-KMLANYASPFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAAGLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_METAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans GN=gatA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.802e-20
Identity = 58/151 (38.41%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  414 TMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T+  +ALE+AK +D  +E H    GPL G+PI+IKD   V G   + G  + ++      N+ ++E LL+ GAVI  KTN+ +  M   ++ + +G T NP +     GGSSGG  A+VA   +P  +G+D  GS+R P+  CG  G +PT
Sbjct:   41 TVSDKALEQAKKID--VEGHE---GPLAGVPIAIKDNISVVGLPNSCGS-KILEGYVPPFNAHVIEKLLDAGAVILGKTNLDEFAMGSSTETSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPT 185          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_DEIDV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.802e-20
Identity = 65/196 (33.16%), Postives = 98/196 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSC--LTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +AT +AR +  GE +  A+      RA  A  L +   L E   +QA E ++       L G    PL G+P+ +KD   V G +TT G    +    +   +   + L++ GAVI  K N+ +  M   ++++  G TLNP + S   GGSSGG    VA   +P+ +G+D  GS+R P+   G YG +PT  RV
Sbjct:    6 TATALARAVTAGETTPQALLDQAVARAEAASTLNALVSLNEQAGAQAAEVSR------RLAGGEALPLAGVPVIVKDNINVSGTRTTCGS-RILATYVSPYTATAAQRLIDAGAVIVGKANMDEFAMGSSTESSASGPTLNPWDLSRVPGGSSGGSAVAVAANLTPVSLGSDTGGSVRQPAALTGVYGLKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURTA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.802e-20
Identity = 68/194 (35.05%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D  L       GPL GLPI+ KD F  +G ++TAG  + + + A+  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +T+   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNA-FVHVDAELTLAQAKAADAALAKG--EAGPLAGLPIAHKDVFVTRGWRSTAGS-KMLANYASPFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURPP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.802e-20
Identity = 68/194 (35.05%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A  L + + +      L +AK  D  L  H    GPL GLPI+ KD F  KG ++TAG  + + +  +  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +     GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALTAKECSAVELAQLYLKRIDAANSLNAFI-QVDPDLTLAQAKAADALL--HTGHAGPLVGLPIAHKDVFVTKGWRSTAGS-KMLSNYESPFDATVVARLQNAGMVCVGKTNMDEFAMGSSNENSYFGPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_TROWT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Tropheryma whipplei (strain Twist) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.884e-20
Identity = 62/189 (32.80%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  300 ATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            A  +A  +++ E+S+L V  +F      +         T FS   + A+ +DE L+   K + PL G+PI++KD    +   TTAG  + ++      N+ ++E +      I  KTN  +  M   ++ + +  T NP + S TAGGS GG  A V+   +PL +GTD  GSIR+P+ C GT G +PT
Sbjct:   38 AHRLAALIRSKEVSALEVAESFIDNIEASDSRICAFLYTDFSYTRDVARRVDEELKSATK-LSPLAGVPIAVKDMILTRDMPTTAGS-KILEGWIPPYNATVIERISRARMPILGKTNQDEFGMGSSTEYSAYKTTRNPWDLSRTAGGSGGGSSAAVSASQAPLALGTDTGGSIRLPAHCTGTVGIRPT 224          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_TROW8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Tropheryma whipplei (strain TW08/27) GN=gatA PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.884e-20
Identity = 62/189 (32.80%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  300 ATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            A  +A  +++ E+S+L V  +F      +         T FS   + A+ +DE L+   K + PL G+PI++KD    +   TTAG  + ++      N+ ++E +      I  KTN  +  M   ++ + +  T NP + S TAGGS GG  A V+   +PL +GTD  GSIR+P+ C GT G +PT
Sbjct:   38 AHRLAALIRSKEVSALEVAESFIDNIEASDSRICAFLYTDFSYTRDVARRVDEELKSATK-LSPLAGVPIAVKDMILTRDMPTTAGS-KILEGWIPPYNATVIERISRARMPILGKTNQDEFGMGSSTEYSAYKTTRNPWDLSRTAGGSGGGSSAAVSASQAPLALGTDTGGSIRLPAHCTGTVGIRPT 224          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_TREPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema pallidum subsp. pallidum (strain SS14) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.884e-20
Identity = 67/197 (34.01%), Postives = 99/197 (50.25%), Query Frame = 3
Query:  318 QLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETM--FSQALERAKYLDEYLE----------LHGKPVG--PLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            QL+ G +SSL +  AF        +  S L   +  FS A E A+  D               +G  V   PL GLP ++KD   VKGK  T G  + +    A  ++ +V  L   GA+   +TN+ +  M   ++ +++G T NP + S T+GGSSGG  A VA   +P  +GT+  GS+R+P+  CG YG +PT
Sbjct:   17 QLEAGAISSLQIVRAFRNVYEEDTRSASPLGALVEFFSDAEEHARTADNLRASCAQSTKTAGANGGSVSGKPLLGLPFAVKDNISVKGKHCTCGS-KLLADYRAPYDATVVARLRAAGAIPLGRTNMDEFAMGSSTEYSVYGPTRNPRDRSRTSGGSSGGSAAAVAGGQAPFALGTETGGSVRLPAAYCGLYGLKPT 212          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_METBU5.208e-2038.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_BURXL5.208e-2035.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP65.208e-2035.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_METAC6.802e-2038.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DEIDV6.802e-2033.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_BURTA6.802e-2035.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURPP6.802e-2035.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_TROWT8.884e-2032.80Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_TROW88.884e-2032.80Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_TREPS8.884e-2034.01Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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