FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6986 contig Ccv1_Contig6986:1..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_TREPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema pallidum GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.884e-20
Identity = 67/197 (34.01%), Postives = 99/197 (50.25%), Query Frame = 3
Query:  318 QLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETM--FSQALERAKYLDEYLE----------LHGKPVG--PLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            QL+ G +SSL +  AF        +  S L   +  FS A E A+  D               +G  V   PL GLP ++KD   VKGK  T G  + +    A  ++ +V  L   GA+   +TN+ +  M   ++ +++G T NP + S T+GGSSGG  A VA   +P  +GT+  GS+R+P+  CG YG +PT
Sbjct:   17 QLEAGAISSLQIVRAFRNVYEEDTRSASPLGALVEFFSDAEEHARTADNLRASCAQSTKTAGANGGSVSGKPLLGLPFAVKDNISVKGKHCTCGS-KLLADYRAPYDATVVARLRAAGAIPLGRTNMDEFAMGSSTEYSVYGPTRNPRDRSRTSGGSSGGSAAAVAGGQAPFALGTETGGSVRLPAAYCGLYGLKPT 212          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_TREDE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema denticola GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.884e-20
Identity = 65/191 (34.03%), Postives = 99/191 (51.83%), Query Frame = 3
Query:  303 TEIARQLKTGELSSLAVTTAFAKRAA--IAQQLTSCLTETMFSQALERAKYLDEYLELHGK-PVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T++  +LK  ELSSL +  AF       +   L        F  A E AK  DE +         PL GLPI++KD   + GK  T      ++   A  N+ +++ LLE GAV+  + N+ +  M   ++ + +G + NP + + T GGSSGG  A+VA   +P  +GT+  GS+R+P+  CG YG +PT
Sbjct:    8 TQLRDKLKNKELSSLQILRAFKDEYEKDLKHPLPLNGFVEFFEDAEEHAKKADELIAQGVSFDEKPLLGLPIAVKDNISMAGKLCTC-CSRSLQGYYAPYNATVIDRLLEAGAVLMGRINMDELAMGSSTEFSCYGPSRNPVDRARTPGGSSGGSAAVVAGNQAPFSLGTETGGSVRLPASYCGIYGLKPT 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_MARMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinomonas sp. (strain MWYL1) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.884e-20
Identity = 67/195 (34.36%), Postives = 103/195 (52.82%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAA-IAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S + +A++L+  ++SS+ +T  F  R A +  QL S +T +    ALE+A   D  L+  GK    L G+P++ KD F  +G  TT G  + + +      S +   + + GAV+  KTN+ +  M   ++N+ +G   NP N  +  GGSSGG  A +A   +    GTD  GSIR P+  CG  G +PT  RV
Sbjct:    5 SISTLAQKLRNKDISSVELTRLFLARIAKLDPQLNSFITVSE-QHALEQAAAADVLLQ-SGKGTS-LTGIPVAHKDLFCTEGTLTTCGS-KMLHNFVPPYESTVTSRIQQAGAVMLGKTNMDEFAMGSSNENSFYGAVKNPWNLDMVPGGSSGGSAAAIAAGLAVAATGTDTGGSIRQPASFCGITGLKPTYGRV 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_PROM4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9211) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 69/192 (35.94%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  306 EIARQLKTGELSSLA-VTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E  ++L   E+SSL  V   FA+   +  +L + L +     A E AK +DE   L GK + PL G+P +IKD    KG +TT    + ++       S + + L E GA++  KTN+ +  M   ++ + FG T NP + S   GGSSGG  A VA       +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    5 EWRQRLNNREISSLELVNEQFARIKDVDNKLHAFL-KLEEDSARENAKRIDE-ARLSGKELPPLAGIPFAIKDNLCTKGVKTTCSS-KMLESFVPPYESTVTQRLWEAGAILLGKTNLDEFAMGSSTETSAFGATSNPWDLSRVPGGSSGGSAAAVASGLCLAALGSDTGGSIRQPASFCGVVGLKPTYGRV 193          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_PROM3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9303) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E  +QLK GE+S+  +      R A+         +    +A   A  +DE L   G+ + PL G+P++IKD    KG +TT      ++       S + E L + GAV+  KTN+ +  M   ++ + FG T NP + S   GGSSGG  A VA       +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    5 EWRQQLKLGEVSARELIDHQLARIAVVDPTLHAFLDVTAERARADADRIDEALAA-GESLPPLAGVPLAIKDNLCTKGIRTTCSS-RMLETFVPPYESTVTERLWQAGAVLLGKTNLDEFAMGSSTETSAFGATSNPWDISRVPGGSSGGSAAAVAAGECMAALGSDTGGSIRQPASFCGVVGLKPTYGRV 193          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_NITOC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 67/195 (34.36%), Postives = 100/195 (51.28%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAA-IAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S  E+A  LK  E SS  +T  + KR   + + L S +T +   +AL++AK  D  L+        + G+P++ KD F   G +T+ G  + + +  A  N+ +V  L   GAV+  KTN+ +  M   ++ + +G   NP       GGSSGG  A VA + +P   GTD  GSIR P+  CG  G +PT  RV
Sbjct:    5 SLAELASALKAREFSSEELTQHYLKRIERLNEDLNSFITVST-EEALKQAKAADAILQ--SGEGSSITGIPLAHKDIFCTTGVKTSCGS-KMLDNFTAPYNATVVSRLKTAGAVMLGKTNMDEFAMGSSNETSFYGSVKNPWAHDRVPGGSSGGSAAAVAARLTPAATGTDTGGSIRQPAALCGITGLKPTYGRV 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CYAA5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain ATCC 51142) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 63/190 (33.16%), Postives = 96/190 (50.53%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            S  E+ +QL   E S++ +TT   +R            +     ALE AK +DE +  + + +G L G+PI IKD     G +TT G  + + +      S + + L + GAV+  KTN+ +  M   ++N+ +  T NP + S   GGSSGG  A VA     + +G+D  GSIR P+  CG  G +PT
Sbjct:    3 SIRELHQQLVNKERSAVEITTEALERINAVDSKVKSFLQVTADHALETAKKVDEKIAKN-EEIGLLAGIPIGIKDNMCTTGIKTTCGS-KILANFVPPYESTVTQKLKDAGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLSRVPGGSSGGSAAAVAASECVVALGSDTGGSIRQPASLCGVVGLKPT 190          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 68/194 (35.05%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D   EL     GPL GLPI+ KD F  +G ++TAG  + + +  +  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +T+   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALAAKECSAVELAQHYLKRIDAARDLNA-FVHVEPELTLAQAKAADA--ELARGAGGPLTGLPIAHKDVFVTRGWRSTAGS-KMLANYESPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_THETN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter tengcongensis GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 63/187 (33.69%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            E+   L   E+S+  VT ++ +R    +     L       ALERAK  DE ++        L G+P+ IKD    +G +TT    + +++     N+ +VE LL  G VI  K+N+ +  M   ++N+ F  T NP + S   GGSSGG  A VA   +   +G+D  GSIR P+  CG  G +PT
Sbjct:   10 ELKELLHKREVSAQEVTKSYLERIKEVEPKIDALVTITEEFALERAKVADEMIK--NGEAKDLTGIPVIIKDNISTEGIRTTCSS-KMLENYIPPYNATVVERLLNEGVVILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAVAADEAAFALGSDTGGSIRQPASLCGVVGMKPT 193          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_THET8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gatA PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 67/195 (34.36%), Postives = 102/195 (52.31%), Query Frame = 3
Query:  300 ATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTE--TMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            A EI  ++  GE+S L V  A+ KR    Q+L   L    ++  + LE A+ +D  L        PL GL +++KD    +G +TTAG    +++      +  V  L  LGA++  KTN+ +  M   ++++ F  T NP +     GGSSGG  A +A   +PL +G+D  GS+R P+  CG YG +PT  RV
Sbjct:    3 AHEIRARVARGEVSPLEVAQAYLKRV---QELDPGLGAFLSLNERLLEEAEAVDPGL--------PLAGLVVAVKDNIATRGLRTTAGS-RLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRV 185          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_TREPA8.884e-2034.01Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_TREDE8.884e-2034.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_MARMS8.884e-2034.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_PROM41.160e-1935.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM31.160e-1934.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NITOC1.160e-1934.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_CYAA51.160e-1933.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURM11.160e-1935.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_THETN1.515e-1933.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THET81.515e-1934.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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