FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_THET2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 67/195 (34.36%), Postives = 102/195 (52.31%), Query Frame = 3
Query:  300 ATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTE--TMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            A EI  ++  GE+S L V  A+ KR    Q+L   L    ++  + LE A+ +D  L        PL GL +++KD    +G +TTAG    +++      +  V  L  LGA++  KTN+ +  M   ++++ F  T NP +     GGSSGG  A +A   +PL +G+D  GS+R P+  CG YG +PT  RV
Sbjct:    3 AHEIRARVARGEVSPLEVAQAYLKRV---QELDPGLGAFLSLNERLLEEAEAVDPGL--------PLAGLVVAVKDNIATRGLRTTAGS-RLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRV 185          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SALRD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinibacter ruber (strain DSM 13855) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 62/192 (32.29%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  303 TEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            T+  R L  GE S  A+ ++F +R        +  T      AL  A+YLD   E  G P  PL GL +++KD   ++G   + G  + +   ++  ++ +++ L + GA+   KTN  +  M   ++ + FG   NPH      GGSSGG  A VA       +G+D  GS+R P+  CGT G +PT  RV
Sbjct:    7 TDARRALDAGETSCEALVSSFLERIDARDNEINAFTSVDQDGALNHARYLDSQRE-RGNP-RPLAGLVLAVKDNICIRGYPVSCGS-KMLADFSSLYDATVIDRLRDAGAIFIGKTNCDEFAMGSSNETSHFGPVRNPHAPEYVPGGSSGGSAAAVAAGLCHAALGSDTGGSVRQPAAFCGTVGLKPTYGRV 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_METMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 59/151 (39.07%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  414 TMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T+  +ALE+AK +D+  E H    GPL G+PI+IKD   V G   + G  + ++      N+ ++E LL  GAVI  KTN+ +  M   ++ + FG T NP +     GGSSGG  A+VA   +P  +G+D  GS+R P+  CG  G +PT
Sbjct:   41 TISDKALEQAKKIDK--EGHE---GPLAGVPIAIKDNISVVGLPNSCGS-KILEGYVPPFNAHVIEKLLSAGAVILGKTNMDEFAMGSSTETSHFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPASFCGVVGLKPT 185          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_LEPBP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 58/192 (30.21%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  303 TEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +EI ++L  G LSS  + +A+ +R            E    + L++AK  D+  + +GK +    G+PI IKD   + G+ T+    + +++  +  ++ ++  L E G V++ + N+ +  M   ++N+ F  + NP ++    GGSSGG  A VA    P+ +G+D  GSIR P+  CG +G +PT  RV
Sbjct:   10 SEIKKRLNEGSLSSEELVSAYLERINAVDSKLKAFLELNQEKILKQAKESDDRRK-NGKLLSEFDGIPIGIKDNICITGEVTSCSS-KILENFVSPYDATVISKLKEKGFVLFPRLNMDEFAMGSSTENSAFQTSKNPFDSDRIPGGSSGGSAAAVAGSMLPISLGSDTGGSIRQPASLCGIWGLKPTYGRV 199          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_LEPBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 58/192 (30.21%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  303 TEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +EI ++L  G LSS  + +A+ +R            E    + L++AK  D+  + +GK +    G+PI IKD   + G+ T+    + +++  +  ++ ++  L E G V++ + N+ +  M   ++N+ F  + NP ++    GGSSGG  A VA    P+ +G+D  GSIR P+  CG +G +PT  RV
Sbjct:   10 SEIKKRLNEGSLSSEELVSAYLERINAVDSKLKAFLELNQEKILKQAKESDDRRK-NGKLLSEFDGIPIGIKDNICITGEVTSCSS-KILENFVSPYDATVISKLKEKGFVLFPRLNMDEFAMGSSTENSAFQTSKNPFDSDRIPGGSSGGSAAAVAGSMLPISLGSDTGGSIRQPASLCGIWGLKPTYGRV 199          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CORGL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium glutamicum GN=gatA PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 61/192 (31.77%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  291 TNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T +A E+A  + + E++S  VT A   R A               +AL  A  +D+ L+    P   L G+P+++KD F      TTA   + ++   +  ++ +   + E G  I  KTN+ +  M   ++N+ +G T NP +   TAGGS GG  A +A   +PL +GTD  GSIR P+    T G +PT
Sbjct:   16 TKTAAELAGLIHSREVTSREVTQAHLDRIAAVDGDIHAFLHVGQEEALNAADDVDKRLDAGEAPASALAGVPLALKDVFTTTDAPTTAAS-KMLEGYMSPYDATVTRKIREAGIPILGKTNMDEFAMGSSTENSAYGPTHNPWDLERTAGGSGGGSSAALAAGQAPLAIGTDTGGSIRQPAALTNTVGVKPT 206          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CORGB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium glutamicum (strain R) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 61/192 (31.77%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  291 TNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T +A E+A  + + E++S  VT A   R A               +AL  A  +D+ L+    P   L G+P+++KD F      TTA   + ++   +  ++ +   + E G  I  KTN+ +  M   ++N+ +G T NP +   TAGGS GG  A +A   +PL +GTD  GSIR P+    T G +PT
Sbjct:   16 TKTAAELAGLIHSREVTSREVTQAHLDRIAAVDGDIHAFLHVGQEEALNAADDVDKRLDAGEAPASALAGVPLALKDVFTTTDAPTTAAS-KMLEGYMSPYDATVTRKIREAGIPILGKTNMDEFAMGSSTENSAYGPTHNPWDLERTAGGSGGGSSAALAAGQAPLAIGTDTGGSIRQPAALTNTVGVKPT 206          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURVG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 67/194 (34.54%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D   EL     GPL G+PI+ KD F  +G ++TAG  + +++  +  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +T    GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALAAKECSAVELAQLYLKRIDAARDLNA-FVHVDADLTLAQAKAADA--ELARGAGGPLTGVPIAHKDVFVTRGWRSTAGS-KMLENYQSPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTHAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_ACIBL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacteria bacterium (strain Ellin345) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 66/196 (33.67%), Postives = 100/196 (51.02%), Query Frame = 3
Query:  291 TNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            T  AT IA Q +  + ++ A+  +F K+        +        +AL +A  +D   +  G  +  L GLP++IKD    KG +TTAG  + ++   A  ++ +V+ L   GAVI  KTN  +  M   ++N+ +G   NP + S   GGSSGG  A+VA   +   +G+D  GSIR P+  CG  G  PT  RV
Sbjct:    7 TIDATRIAIQER--QATATAIAESFYKKIEAEDGEINAYLTLSRDRALAQAAKIDAIAD-RGDDLPRLAGLPVAIKDVISTKGVRTTAGS-KILEEFIAPYDATVVQKLEAAGAVILGKTNCDEFAMGSSNENSAYGPVRNPRDKSRVPGGSSGGSAAVVAAGTAVTSLGSDTGGSIRQPASFCGVVGLMPTYGRV 198          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_PROAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Propionibacterium acnes GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.979e-19
Identity = 63/192 (32.81%), Postives = 97/192 (50.52%), Query Frame = 3
Query:  291 TNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T +A E+  ++   ++SS  VT A   R +              + AL+ A+ +D  +   G+ +GPL G+P+++KD F  KG  TTA   + ++      +S +V    + G VI  KTN+ +  M   ++ + FG T NP +     GGS GG  A +A   +PL +GTD  GSIR P    GT G +PT
Sbjct:    6 TLTAAELGERIAARQISSEEVTQAHLDRISEVDGDIHAFLLVDHAGALDAARRIDARIA-DGEHLGPLAGVPLAVKDLFCTKGIATTASS-QMLEGWIPPYDSTIVTRCKDAGMVILGKTNLDEFAMGSSTETSAFGPTHNPWDLERVPGGSGGGSAASLASFQAPLALGTDTGGSIRQPGAVTGTVGIKPT 195          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_THET21.515e-1934.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_SALRD1.515e-1932.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METMA1.515e-1939.07Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LEPBP1.515e-1930.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEPBA1.515e-1930.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_CORGL1.515e-1931.77Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CORGB1.515e-1931.77Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURVG1.515e-1934.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ACIBL1.515e-1933.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_PROAC1.979e-1932.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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