FC877993

Overview
NameFC877993
Unique NameFC877993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_CRYNV (Nucleolar GTP-binding protein 2 OS=Cryptococcus neoformans var. grubii GN=NOG2 PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.694e-43
Identity = 102/252 (40.48%), Postives = 142/252 (56.35%), Query Frame = 3
Query:  207 SGKPKHSLDANRTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQHE-FQS--KELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQA--RVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLV----------RHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI 914
            SG         R  G++  R A +  R+ M    +  RDR GK+++   FQ   KE    R++PDRRWFGNTR ++Q  L+ FR  L+   +  Y+V+L+  KLP  LL D  K    R H+++TEPF + FGPK +RKRP+L     E L + +  S  A      A T+    +G+G  DL           R  ++ KG S+RIWGELYKV+DSSDVV+ VLDARDP GTRC  +  +L++   HKH++
Sbjct:   22 SGTSTGEFTLKRVKGENFYRDAKSASRVKMLNGGKAVRDRDGKIVEAAAFQKGEKEAEPGRVKPDRRWFGNTRVISQSALDHFRTALKEQKADPYSVLLKRNKLPMGLLQDDTKDGGRRPHIVETEPFGNTFGPKAQRKRPRLDIGSIEELGESSAASAAAAA----AETATAESQGNGTADLADIYHPTTSTAREPIYAKGTSRRIWGELYKVLDSSDVVIHVLDARDPLGTRCKPVVEYLRKEKAHKHLV 269          
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_CRYGA (Nucleolar GTP-binding protein 2 OS=Cryptococcus gattii GN=NOG2 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.002e-43
Identity = 102/252 (40.48%), Postives = 144/252 (57.14%), Query Frame = 3
Query:  207 SGKPKHSLDANRTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQHE-FQS--KELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQA--RVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLV----------RHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI 914
            SG         R  G++  R A +  R+ M    +  RDR GK+++   FQ   KE    R++PDRRWFGNTR ++Q  L+ FR  L+   +  Y+V+L+  KLP  LL D  K +  R H+++TEPF D FGPK +RKRP+L     E L + +  +  A E     + +AE  + +G  DL           R  ++ KG S+RIWGELYKV+DSSDVV+ VLDARDP GTRC  +  +L++   HKH++
Sbjct:   22 SGTSTGEFTLKRVKGENFYRDAKSAARVKMLNGGKAVRDRDGKIVEAAAFQKGEKEAEPGRVKPDRRWFGNTRVISQSALDHFRTALKEQKADPYSVLLKRNKLPMGLLQDDTKDSGSRPHIVETEPFGDTFGPKAQRKRPRLDIGSIEELGESSAAAATAAE-----AATAES-QANGTADLADIYHPTTSTAREPIYAKGTSRRIWGELYKVLDSSDVVIHVLDARDPLGTRCKPVVEYLRKEKAHKHLV 267          
The following BLAST results are available for this feature:
BLAST of FC877993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NOG2_CRYNV2.694e-4340.48Nucleolar GTP-binding protein 2 OS=Cryptococcus ne... [more]
NOG2_CRYGA6.002e-4340.48Nucleolar GTP-binding protein 2 OS=Cryptococcus ga... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA85CC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877993 ID=FC877993; Name=FC877993; organism=Citrus clementina; type=EST; length=938bp
ATGAGAAAAGGAAAAACCCTAGCCCCAAATTAGCAAAGCAAGCCGCCCAC
TTCTGCAAACTCAGAACTCAAGTTGGCGCCACCCTTACATCAAGAGCTGA
AAGCCGCAATTTACTCAGCCTTCCGTCATCCTCCTTACAGGAATTCGTCG
CCTTTACTCACCGGTGAACGAAAATGGCAAAGACGAAAGAGAAGAAAGTG
AATGTGTCGGGCAAGCCGAAACACTCGCTGGACGCGAATCGTACGGACGG
GAAAAGCGGTAGCCGAAGTGCGTCGACAGTACGCCGCCTCAATATGTACA
AGACGAGGCCGAAACGCGACCGTAAGGGCAAAGTTTTGCAGCACGAGTTT
CAGTCGAAGGAGTTGCCCAACACTCGCATTCAGCCAGACCGCCGCTGGTT
CGGGAACACACGTTGTGTGAATCAGAAGCAGCTCGAGTTCTTTCGTGAAG
AGCTACAGAGCCATATGTCTAGTAGCTATAATGTTATCTTGAGAGAGAAA
AAACTGCCCTTTTCTCTCCTAAATGATCACCAGAAGCAAGCTAGAGTTCA
CCTCCTTGATACCGAGCCTTTTCAAGATGCCTTTGGACCTAAGGGAAAGA
GGAAGAGGCCAAAGTTATTGGCATCAGATTACGAATCTTTAGTTAAGAGA
GCTGATGGTTCTCAAGATGCCTTTGAGCAGAAGAATGATGCTAGTACATC
AGCAGAAGGAGTTGAGGGAGATGGATTTAGGGATCTTGTTCGGCATACAA
TGTTTGAGAAGGGTCAAAGTAAACGTATATGGGGAGAACTGTACAAAGTA
ATAGACTCGTCGGATGTTGTTGTCCAGGTTTTGGATGCTAGAGACCCTCA
AGGCACAAGATGTCATCATCTTGAGAGGCATCTAAAAGAGCATTGCAAAC
ATAAGCACATGATTCTTCTGTAAACAAGTGCGATCTTG
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