FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCPA (Peptidyl-tRNA hydrolase OS=Mycobacterium paratuberculosis GN=pth PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.565e-31
Identity = 73/190 (38.42%), Postives = 100/190 (52.63%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPGD Y  TRHNVGF + D  A   G          A    G +    V++AKP+ YMN SG   GPLA +Y +P   ++V HDD+ L  G                +SV N   G+++F R+RIGIGRPPG+ DP AF+L+ F +  R  + T  ++  +  +LL+  GL  +    H
Sbjct:    1 MAEPLLVVGLGNPGDNYARTRHNVGFMVADLLAARMGSKFKAHKRSGAEIVSGRLAGRSVVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVANAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGLEPAQNRVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCA1 (Peptidyl-tRNA hydrolase OS=Mycobacterium avium (strain 104) GN=pth PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.565e-31
Identity = 73/190 (38.42%), Postives = 100/190 (52.63%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPGD Y  TRHNVGF + D  A   G          A    G +    V++AKP+ YMN SG   GPLA +Y +P   ++V HDD+ L  G                +SV N   G+++F R+RIGIGRPPG+ DP AF+L+ F +  R  + T  ++  +  +LL+  GL  +    H
Sbjct:    1 MAEPLLVVGLGNPGDNYARTRHNVGFMVADLLAARMGSKFKAHKRSGAEIVSGRLAGRSVVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVSNAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGLEPAQNRVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_FRASC (Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI3) GN=pth PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.565e-31
Identity = 62/188 (32.98%), Postives = 106/188 (56.38%), Query Frame = 1
Query:  331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894
            PWL  GLGNPG  Y G RHN GF ++D  AE  G  + +   +A   +  +  A  +LA+P ++MNLSG       ++YK+ ++R++V HD++ +P G                +S+ ++  G R++ R+R+GIGRPPG+MDP  F+L+ F +  R  +   L+   + +++L++ GL  +   +H +
Sbjct:   10 PWLVAGLGNPGPTYAGNRHNAGFMVVDLLAERTGSRLKSHRSRADVAETRLAGARAVLARPLSFMNLSGGPVAAARSFYKVEVSRLIVVHDELDIPFGAVRLKRGGGDNGHNGLRSI-SSALGTRDYLRVRVGIGRPPGRMDPADFVLRDFTSTERRELPLLLEHAADSVEMLIADGLEPAQNRYHAL 196          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_FRAAA (Peptidyl-tRNA hydrolase OS=Frankia alni (strain ACN14a) GN=pth PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.552e-30
Identity = 63/188 (33.51%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894
            PWL VGLGNPG  Y G RHN GF ++D  AE  G  + +   +A   +  +     +LA+P ++MNLSG     +  +YK+   RV+V HD++ +P G                +S+ ++  G R++ R+R+GIGRPPG+MDP  ++L+ F A  R  +   L+   + +++L++ GL  +   +H +
Sbjct:   10 PWLVVGLGNPGPGYAGNRHNAGFMVVDLLAERAGSRLKSHRSRADVAEVRLAGTRAILARPLSFMNLSGGPVSAVRTFYKIDPARVIVVHDELDIPFGSVRLKRGGGDNGHNGLRSI-SSALGTRDYLRVRVGIGRPPGRMDPADYVLRDFAAAERRELPLLLEHSADSVEMLITDGLEPTQNRYHAL 196          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCVP (Peptidyl-tRNA hydrolase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=pth PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.251e-30
Identity = 71/191 (37.17%), Postives = 106/191 (55.50%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG +Y  TRHN GF ++D  A+  G     VH K  A    G +   PV+LAKP+ YMN SG   GPLA +Y +    V++ HD++ +  G                +SV +   GN +F R+R+GIGRPPG     +F+L+ FN++ R+ + T L++  +  +LL+++GL  +    H
Sbjct:    1 MAEPVLVVGLGNPGPQYATTRHNAGFMVVDILADRMGEKFK-VHKKSGAEVATGRLAGRPVVLAKPRVYMNESGRQVGPLAKFYSVAPADVVIVHDELDIDFGRIRLKAGGGVAGHNGLRSVASALGGN-DFQRVRVGIGRPPGHKSGASFVLENFNSVERKEVPTILEQAADATELLVAQGLEPAQNTVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACP2 (Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strain SAFR-032) GN=pth PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.470e-30
Identity = 75/183 (40.98%), Postives = 98/183 (53.55%), Query Frame = 1
Query:  340 FVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            FVGLGNPG +Y+ TRHNVGF  ID  ++   I +N       FG GFV    VLL KP TYMNLSGE   PL  YY +PL  + V +DD+ LP G                KS++ +  G+ EF R RIGIGRP   M    ++L +F+   +  I +A+Q  VE  +  L+K   E    F+
Sbjct:    4 FVGLGNPGKEYEKTRHNVGFMTIDELSKKWDIPLNQSKFHGQFGTGFVSGQKVLLVKPLTYMNLSGECVRPLMDYYDIPLEHLKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSLIQHL-GSPEFDRFRIGIGRPQNGMKVVDYVLGRFSEEEQPDIASAIQASVEACEAALTKPFLEVMNDFN 185          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCS2 (Peptidyl-tRNA hydrolase OS=Mycobacterium smegmatis GN=pth PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.237e-29
Identity = 72/191 (37.70%), Postives = 105/191 (54.97%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG  Y  TRHN+GF + D  A   G +   VH K  A    G +    V+LAKP+ YMN SG   GPLA +Y +P  +++V HD++ +  G                +SV +   G + F R+RIG+GRPPG+ DP AF+L+ F A  R  + T +++  +  +LL+++GL  +    H
Sbjct:    1 MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFK-VHKKSGAEVVTGRLAGTSVVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIAQGLEPAQNTVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CHLSY (Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 66/188 (35.11%), Postives = 103/188 (54.79%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894
            WL VGLGNPG++Y  TRHN+GF  +D  AE  G++       +   +G +    V+LAKPQTYMNLSG++   L  +YK+ P   +LV +DD+ LP                  +S++    G  EF RLR+GIG+PPG+MD   ++L +F       +   L    + ++++L +GLT +   ++ +
Sbjct:    2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKPQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYNPL 188          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CHLAA (Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pth PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 66/188 (35.11%), Postives = 103/188 (54.79%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894
            WL VGLGNPG++Y  TRHN+GF  +D  AE  G++       +   +G +    V+LAKPQTYMNLSG++   L  +YK+ P   +LV +DD+ LP                  +S++    G  EF RLR+GIG+PPG+MD   ++L +F       +   L    + ++++L +GLT +   ++ +
Sbjct:    2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKPQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYNPL 188          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOD6 (Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.016e-29
Identity = 66/185 (35.68%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            ++ VGLGNPG KY+ TRHNVGF++ID  A+   IS+  +  KA  G+G VG   VLL KPQTYMNLSGE+   +  YYK+ L+ ++V +DD+ L  G                KS+     G+ +F R+R+G+ +P    D   F+L +F     + I+ AL++  + +  ++ + +  S   ++
Sbjct:    2 YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKPQTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSI-TKCLGSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMSMNKYN 185          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_MYCPA8.565e-3138.42Peptidyl-tRNA hydrolase OS=Mycobacterium paratuber... [more]
PTH_MYCA18.565e-3138.42Peptidyl-tRNA hydrolase OS=Mycobacterium avium (st... [more]
PTH_FRASC8.565e-3132.98Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI... [more]
PTH_FRAAA5.552e-3033.51Peptidyl-tRNA hydrolase OS=Frankia alni (strain AC... [more]
PTH_MYCVP7.251e-3037.17Peptidyl-tRNA hydrolase OS=Mycobacterium vanbaalen... [more]
PTH_BACP29.470e-3040.98Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strai... [more]
PTH_MYCS21.237e-2937.70Peptidyl-tRNA hydrolase OS=Mycobacterium smegmatis... [more]
PTH_CHLSY2.110e-2935.11Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacu... [more]
PTH_CHLAA2.110e-2935.11Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacu... [more]
PTH_CLOD68.016e-2935.68Peptidyl-tRNA hydrolase OS=Clostridium difficile (... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
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