FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2874 contig Ccv1_Contig2874:1..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_NOCFA (Peptidyl-tRNA hydrolase OS=Nocardia farcinica GN=pth PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.332e-28
Identity = 71/188 (37.77%), Postives = 102/188 (54.26%), Query Frame = 1
Query:  331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            P L VGLGNPG +Y+ TRHNVGF + D  AE  G     VH K  A   Q  +    VL+AKP++YMNLSG     LA ++ +P   V+V HD++ LP G                +S+ +     +++ R RIGIGRPPG+ DP  F+L+ F A  R+ +   +++  + ++LLL  GL  +    H
Sbjct:    8 PALVVGLGNPGSEYERTRHNVGFLVADVLAERVGDRF-AVHKKSGADLLQARLDGRQVLIAKPRSYMNLSGRPVAALARFFSVPPTEVIVVHDELDLPFGAVRLKRGGGEGGHNGLRSISSALT-TKDYLRTRIGIGRPPGRQDPADFVLKPFAAAERKEVPVIVEQAADAVELLLRVGLEAAQNQLH 193          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_DEHSC (Peptidyl-tRNA hydrolase OS=Dehalococcoides sp. (strain CBDB1) GN=pth PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.979e-28
Identity = 68/187 (36.36%), Postives = 99/187 (52.94%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ---MDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L +GLGNPG +Y G RHNVGF+ +  FA+   IS +   C +  G G + D  ++LAKPQTYMNLSG++   L   Y L    ++V  DD+ LP G                 S++ +  G +EF RL+IGIG+P  +    +    +L  F    RE I+TA+    E L  L++ GL  ++  F+
Sbjct:    3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKENHISFDKKCCLSRTGSGRINDEEIVLAKPQTYMNLSGKAVNQLLRRYNLKATDIIVVQDDLDLPAGKLRLRLGGSAGGHNGVSSIITDI-GTKEFIRLKIGIGKPDARNNGAEVVDHVLGNFGGEEREIIETAIARAAEALACLITSGLDTASNRFN 188          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CARHZ (Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.979e-28
Identity = 68/185 (36.76%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            ++  GLGNPG +Y+ TRHN GF ++D  A+  GI +     K+  G+G +    VLL KPQTYMNLSG +     ++YKLPL+R++V +DD+ LP G                 S+++   G+ E  RL+IGIGR P   D K ++LQ F    RE ++  L+   E + + L++G  ++   F+
Sbjct:    2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKPQTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL-GSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKAMTDFN 184          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACCN (Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pth PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.196e-28
Identity = 70/184 (38.04%), Postives = 98/184 (53.26%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP TYMNLSGES  PL  YYK+ L   ++ +DD+ LP G                KS + +  G +EF R+R+GI RP   M    ++L +F A     ++ A+++     +  L+K   +    F+
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGMFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDLEDFIIMYDDLDLPVGKLRLRMKGSAGGHNGVKSTIAHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTAEEMVDVNHAIEKAANACEEWLNKSFLQVMNDFN 185          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_DEHSB (Peptidyl-tRNA hydrolase OS=Dehalococcoides sp. (strain BAV1) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.786e-28
Identity = 68/187 (36.36%), Postives = 99/187 (52.94%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ---MDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L +GLGNPG +Y G RHNVGF+ +  FA+   IS +   C +  G G + D  ++LAKPQTYMNLSG++   L   Y L    ++V  DD+ LP G                 S++ +  G +EF RL+IGIG+P  +    +    +L  F    RE I+TA+    E L  L++ GL  ++  F+
Sbjct:    3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKENHISFDKKCCLSRTGSGRINDEEIVLAKPQTYMNLSGKAVNQLLRRYNLKAADIIVVQDDLDLPAGKLRLRLGGSAGGHNGVSSIITDI-GTKEFIRLKIGIGKPDARNNGAEVVDHVLGNFGGEEREIIETAIARAAEALACLITSGLDTASNRFN 188          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLONN (Peptidyl-tRNA hydrolase OS=Clostridium novyi (strain NT) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.786e-28
Identity = 66/185 (35.68%), Postives = 103/185 (55.68%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +L VGLGNPG +Y+ TRHNVGF++ID  +E   I +N    K  +G G + +  V+L KP TYMNLSGES   +  +YK+P   V+V +DD+ L  G                K+++ +F G+  F R+++G+G+P  Q D  + +L KFN   RE +    +   +  + ++ KG  E+   F+
Sbjct:    2 FLIVGLGNPGKEYEHTRHNVGFDIIDVISEKYNIDLNKKKFKGMYGDGTIANEKVILLKPLTYMNLSGESIKEVTDFYKIPKENVIVIYDDISLEVGRMRIREKGSAGGHNGIKNIIAHF-GSDVFPRIKVGVGQPV-QRDLVSHVLGKFNKDDREILSKVFEAASDAAENIIEKGTAEAMNKFN 184          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCGI (Peptidyl-tRNA hydrolase OS=Mycobacterium gilvum (strain PYR-GCK) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.863e-28
Identity = 69/191 (36.13%), Postives = 103/191 (53.93%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG +Y  TRHN+GF + D  A+  G +   VH K  A    G +   PV+LAKP+ YMN SG   GPLA +Y +    V++ HD++ +  G                +SV +    N +F R+R+GIGRPPGQ    +F+L+ FN+  R  + T +++  +  +LL+  G+  +    H
Sbjct:    1 MAEPVLVVGLGNPGPQYATTRHNIGFMVADVLADRMGETFK-VHKKSGAEVTTGRLAGRPVVLAKPRVYMNESGRQVGPLAKFYSIAPTDVVIIHDELDIDFGRIRLKAGGGVAGHNGLRSVGSALSTN-DFQRVRVGIGRPPGQKSGASFVLEPFNSRERPELGTIIEQAADATELLIELGIEPAQNTVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BDEBA (Peptidyl-tRNA hydrolase OS=Bdellovibrio bacteriovorus GN=pth PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.512e-27
Identity = 67/187 (35.83%), Postives = 100/187 (53.48%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDP-KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            WL VGLGNPG +YK TRHN+GF  +D   E  G        KA   Q  + D PV+  KPQTYMNLSGES  PL  +YK+PL R++V HD++  P                  KS+ +   G+ ++ RLR+G+GRP     P   ++L KF      ++   L +  + ++ ++  G+ +++  F+T
Sbjct:    2 WLIVGLGNPGGEYKLTRHNIGFMAVDFLMEGLGNPPIKNQFKAEIAQAKIKDHPVIFCKPQTYMNLSGESVQPLMGFYKIPLERLIVIHDEIDQPFAQMKIQKNRGHGGHNGIKSI-SGLMGSMDYTRLRLGVGRPANPNIPVPDYVLGKFTKEEFAQMPDFLNKAGDAVESIILDGIQKASTKFNT 187          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCTU (Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculosis GN=pth PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27
Identity = 68/190 (35.79%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+  +    H
Sbjct:    1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCTA (Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27
Identity = 68/190 (35.79%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+  +    H
Sbjct:    1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_NOCFA2.332e-2837.77Peptidyl-tRNA hydrolase OS=Nocardia farcinica GN=p... [more]
PTH_DEHSC3.979e-2836.36Peptidyl-tRNA hydrolase OS=Dehalococcoides sp. (st... [more]
PTH_CARHZ3.979e-2836.76Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrog... [more]
PTH_BACCN5.196e-2838.04Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. ... [more]
PTH_DEHSB6.786e-2836.36Peptidyl-tRNA hydrolase OS=Dehalococcoides sp. (st... [more]
PTH_CLONN6.786e-2835.68Peptidyl-tRNA hydrolase OS=Clostridium novyi (stra... [more]
PTH_MYCGI8.863e-2836.13Peptidyl-tRNA hydrolase OS=Mycobacterium gilvum (s... [more]
PTH_BDEBA1.512e-2735.83Peptidyl-tRNA hydrolase OS=Bdellovibrio bacteriovo... [more]
PTH_MYCTU1.975e-2735.79Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculo... [more]
PTH_MYCTA1.975e-2735.79Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
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