FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2874 contig Ccv1_Contig2874:1..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCSS (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain MCS) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27
Identity = 69/191 (36.13%), Postives = 101/191 (52.88%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG  Y  TRHNVGF + D  A   G      H K  A    G +    V+LAKP+TYMN SG + GPLA +Y +    V+V HD++ +  G                KSV     G ++F R+R+G+GRPPG+ D   ++L+ F ++ R  + T  ++  +  +LL+++GL  +    H
Sbjct:    1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSGFKA-HRKSGADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGLEPAQNLVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCSK (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain KMS) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27
Identity = 69/191 (36.13%), Postives = 101/191 (52.88%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG  Y  TRHNVGF + D  A   G      H K  A    G +    V+LAKP+TYMN SG + GPLA +Y +    V+V HD++ +  G                KSV     G ++F R+R+G+GRPPG+ D   ++L+ F ++ R  + T  ++  +  +LL+++GL  +    H
Sbjct:    1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSGFKA-HRKSGADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGLEPAQNLVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCSJ (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain JLS) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27
Identity = 69/191 (36.13%), Postives = 101/191 (52.88%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG  Y  TRHNVGF + D  A   G      H K  A    G +    V+LAKP+TYMN SG + GPLA +Y +    V+V HD++ +  G                KSV     G ++F R+R+G+GRPPG+ D   ++L+ F ++ R  + T  ++  +  +LL+++GL  +    H
Sbjct:    1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSGFKA-HRKSGADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGLEPAQNLVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCBT (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27
Identity = 68/190 (35.79%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+  +    H
Sbjct:    1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCBP (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27
Identity = 68/190 (35.79%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+  +    H
Sbjct:    1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCBO (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27
Identity = 68/190 (35.79%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+  +    H
Sbjct:    1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_RHOOB (Peptidyl-tRNA hydrolase OS=Rhodococcus opacus (strain B4) GN=pth PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.368e-27
Identity = 63/186 (33.87%), Postives = 104/186 (55.91%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L VGLGNPG +Y+ TRHNVGF +    +   G   +  H K  A   QG +   P +LAKP+++MNLSG +   LA ++ +    ++V HD++ L  G                +S+  +  G +++ R R+GIGRPPG+MDP +++L+ F+++ R+ +D   +E  + ++L+L  GL  +    H
Sbjct:    7 LVVGLGNPGPQYEKTRHNVGFMVAGVLSARMGGKFSA-HKKSGAEIVQGRLEGRPTILAKPRSFMNLSGSAVAGLARFFSVDPGNIVVIHDELDLDFGTIRLKQGGGEGGHNGLRSISQSL-GTKDYLRTRVGIGRPPGRMDPASYVLKPFSSVERKELDLVCEESADAVELVLRLGLEAAQNRLH 190          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCMM (Peptidyl-tRNA hydrolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=pth PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.368e-27
Identity = 70/191 (36.65%), Postives = 100/191 (52.36%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG+ Y  TRHN+GF + D  A   G     VH +  A    G +    V+LAKP+ YMN SG    PLA +Y +P   ++V HD++ L  G                +SV     G ++F R+RIGIGRPPG+ DP  F+L+ F++  R  + T  ++  +  +LL+  GL  +    H
Sbjct:    1 MAEPLLVVGLGNPGENYARTRHNLGFMVADLLAARLGAKFK-VHKRSGAEVVTGRLAQRSVVLAKPRCYMNESGRQVAPLAKFYSVPPADLIVIHDELDLDFGRIRLKFGGGEGGHNGLRSVAAAL-GTKDFQRVRIGIGRPPGRKDPATFVLENFSSPERPEVPTICEQAADATELLVEIGLEPAQNRVH 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_HERA2 (Peptidyl-tRNA hydrolase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pth PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.368e-27
Identity = 70/181 (38.67%), Postives = 98/181 (54.14%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 873
            +L VGLGNPG+KY   RHNVGF+ +  FA    +S +     A   +G V    V LA+PQT+MN SG+S   L  +YK+ P + +LV +DD+ LP G                 S++    G ++FARLR GIGRPP   +   F+L  +NA  RE +       VE  +L LS G+T++
Sbjct:    2 FLIVGLGNPGEKYLNNRHNVGFQCVAEFARRHHLSFDGKRSDARIAEGLVNGQRVALARPQTFMNDSGKSVVGLVNWYKIDPASELLVVYDDLDLPFGTIKLRNQGSSGGQRGMNSII-QLLGTQKFARLRFGIGRPPEGWEVINFVLGNWNAAERETLPKLYDRAVEACELCLSDGVTKA 181          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCUA (Peptidyl-tRNA hydrolase OS=Mycobacterium ulcerans (strain Agy99) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.399e-27
Identity = 70/191 (36.65%), Postives = 99/191 (51.83%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +A P L VGLGNPG+ Y  TRHN+GF + D  A   G     VH +  A    G +    V+LAKP+ YMN SG    PLA +Y +P   ++V HD++ L  G                +SV     G + F R+RIGIGRPPG+ DP  F+L+ F++  R  + T  ++  +  +LL+  GL  +    H
Sbjct:    1 MAEPLLVVGLGNPGENYARTRHNLGFMVADLLAARLGAKFK-VHKRSGAEVVTGRLAQRSVVLAKPRCYMNESGRQVAPLAKFYSVPPADLIVIHDELDLDFGRIRLKFGGGEGGHNGLRSVAAAL-GTKNFQRVRIGIGRPPGRKDPATFVLENFSSPERPEVPTICEQAADATELLVEVGLEPAQNRVH 189          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_MYCSS1.975e-2736.13Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (stra... [more]
PTH_MYCSK1.975e-2736.13Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (stra... [more]
PTH_MYCSJ1.975e-2736.13Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (stra... [more]
PTH_MYCBT1.975e-2735.79Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (st... [more]
PTH_MYCBP1.975e-2735.79Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (st... [more]
PTH_MYCBO1.975e-2735.79Peptidyl-tRNA hydrolase OS=Mycobacterium bovis GN=... [more]
PTH_RHOOB3.368e-2733.87Peptidyl-tRNA hydrolase OS=Rhodococcus opacus (str... [more]
PTH_MYCMM3.368e-2736.65Peptidyl-tRNA hydrolase OS=Mycobacterium marinum (... [more]
PTH_HERA23.368e-2738.67Peptidyl-tRNA hydrolase OS=Herpetosiphon aurantiac... [more]
PTH_MYCUA4.399e-2736.65Peptidyl-tRNA hydrolase OS=Mycobacterium ulcerans ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
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