FC877996
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCSS (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain MCS) GN=pth PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27 Identity = 69/191 (36.13%), Postives = 101/191 (52.88%), Query Frame = 1 Query: 322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888 +A P L VGLGNPG Y TRHNVGF + D A G H K A G + V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G KSV G ++F R+R+G+GRPPG+ D ++L+ F ++ R + T ++ + +LL+++GL + H Sbjct: 1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSGFKA-HRKSGADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGLEPAQNLVH 189
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCSK (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain KMS) GN=pth PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27 Identity = 69/191 (36.13%), Postives = 101/191 (52.88%), Query Frame = 1 Query: 322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888 +A P L VGLGNPG Y TRHNVGF + D A G H K A G + V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G KSV G ++F R+R+G+GRPPG+ D ++L+ F ++ R + T ++ + +LL+++GL + H Sbjct: 1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSGFKA-HRKSGADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGLEPAQNLVH 189
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCSJ (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain JLS) GN=pth PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27 Identity = 69/191 (36.13%), Postives = 101/191 (52.88%), Query Frame = 1 Query: 322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888 +A P L VGLGNPG Y TRHNVGF + D A G H K A G + V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G KSV G ++F R+R+G+GRPPG+ D ++L+ F ++ R + T ++ + +LL+++GL + H Sbjct: 1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSGFKA-HRKSGADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGLEPAQNLVH 189
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCBT (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pth PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27 Identity = 68/190 (35.79%), Postives = 96/190 (50.53%), Query Frame = 1 Query: 322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888 +A P L VGLGNPG Y TRHN+GF + D A G A G ++LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +SV+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+ +G+ + H Sbjct: 1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCBP (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pth PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27 Identity = 68/190 (35.79%), Postives = 96/190 (50.53%), Query Frame = 1 Query: 322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888 +A P L VGLGNPG Y TRHN+GF + D A G A G ++LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +SV+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+ +G+ + H Sbjct: 1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCBO (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis GN=pth PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27 Identity = 68/190 (35.79%), Postives = 96/190 (50.53%), Query Frame = 1 Query: 322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888 +A P L VGLGNPG Y TRHN+GF + D A G A G ++LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +SV+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+ +G+ + H Sbjct: 1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_RHOOB (Peptidyl-tRNA hydrolase OS=Rhodococcus opacus (strain B4) GN=pth PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.368e-27 Identity = 63/186 (33.87%), Postives = 104/186 (55.91%), Query Frame = 1 Query: 337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888 L VGLGNPG +Y+ TRHNVGF + + G + H K A QG + P +LAKP+++MNLSG + LA ++ + ++V HD++ L G +S+ + G +++ R R+GIGRPPG+MDP +++L+ F+++ R+ +D +E + ++L+L GL + H Sbjct: 7 LVVGLGNPGPQYEKTRHNVGFMVAGVLSARMGGKFSA-HKKSGAEIVQGRLEGRPTILAKPRSFMNLSGSAVAGLARFFSVDPGNIVVIHDELDLDFGTIRLKQGGGEGGHNGLRSISQSL-GTKDYLRTRVGIGRPPGRMDPASYVLKPFSSVERKELDLVCEESADAVELVLRLGLEAAQNRLH 190
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCMM (Peptidyl-tRNA hydrolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=pth PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.368e-27 Identity = 70/191 (36.65%), Postives = 100/191 (52.36%), Query Frame = 1 Query: 322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888 +A P L VGLGNPG+ Y TRHN+GF + D A G VH + A G + V+LAKP+ YMN SG PLA +Y +P ++V HD++ L G +SV G ++F R+RIGIGRPPG+ DP F+L+ F++ R + T ++ + +LL+ GL + H Sbjct: 1 MAEPLLVVGLGNPGENYARTRHNLGFMVADLLAARLGAKFK-VHKRSGAEVVTGRLAQRSVVLAKPRCYMNESGRQVAPLAKFYSVPPADLIVIHDELDLDFGRIRLKFGGGEGGHNGLRSVAAAL-GTKDFQRVRIGIGRPPGRKDPATFVLENFSSPERPEVPTICEQAADATELLVEIGLEPAQNRVH 189
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_HERA2 (Peptidyl-tRNA hydrolase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pth PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.368e-27 Identity = 70/181 (38.67%), Postives = 98/181 (54.14%), Query Frame = 1 Query: 334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 873 +L VGLGNPG+KY RHNVGF+ + FA +S + A +G V V LA+PQT+MN SG+S L +YK+ P + +LV +DD+ LP G S++ G ++FARLR GIGRPP + F+L +NA RE + VE +L LS G+T++ Sbjct: 2 FLIVGLGNPGEKYLNNRHNVGFQCVAEFARRHHLSFDGKRSDARIAEGLVNGQRVALARPQTFMNDSGKSVVGLVNWYKIDPASELLVVYDDLDLPFGTIKLRNQGSSGGQRGMNSII-QLLGTQKFARLRFGIGRPPEGWEVINFVLGNWNAAERETLPKLYDRAVEACELCLSDGVTKA 181
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCUA (Peptidyl-tRNA hydrolase OS=Mycobacterium ulcerans (strain Agy99) GN=pth PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 4.399e-27 Identity = 70/191 (36.65%), Postives = 99/191 (51.83%), Query Frame = 1 Query: 322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888 +A P L VGLGNPG+ Y TRHN+GF + D A G VH + A G + V+LAKP+ YMN SG PLA +Y +P ++V HD++ L G +SV G + F R+RIGIGRPPG+ DP F+L+ F++ R + T ++ + +LL+ GL + H Sbjct: 1 MAEPLLVVGLGNPGENYARTRHNLGFMVADLLAARLGAKFK-VHKRSGAEVVTGRLAQRSVVLAKPRCYMNESGRQVAPLAKFYSVPPADLIVIHDELDLDFGRIRLKFGGGEGGHNGLRSVAAAL-GTKNFQRVRIGIGRPPGRKDPATFVLENFSSPERPEVPTICEQAADATELLVEVGLEPAQNRVH 189 The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bpback to top |