FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_ANADE (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=pth PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.724e-26
Identity = 67/179 (37.43%), Postives = 97/179 (54.19%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 873
            L VGLGNPG++Y  TRHNVGF + D  A+  G S       A   +  +G   V + KPQTYMN SGE+ G    ++KL L+ ++V HDD+ L                   KSV N   G+ E+AR+R+G+GRPP +MDP  ++L KF       +D  +++ VE  +L +  G  ++
Sbjct:    3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFTAKKFAAELAEARLGPERVWILKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELEPFRVQLKVGGGHGGHNGVKSV-NAHVGSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELGAAKA 180          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_ANAD2 (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pth PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.724e-26
Identity = 67/175 (38.29%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 861
            L VGLGNPG++Y  TRHNVGF + D  A+  G S +     A   +  +G   V + KPQTYMN SGE+ G    ++KL L+ ++V HDD+ L                   KSV N   G+ E+AR+R+G+GRPP +MDP  ++L KF       +D  +++ VE  +L +  G
Sbjct:    3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFSAKKFAAELAEARLGPERVWIMKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELDPYRVQLKVGGGHGGHNGVKSV-NAHVGSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELG 176          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_NITOC (Peptidyl-tRNA hydrolase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=pth PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.863e-26
Identity = 67/194 (34.54%), Postives = 101/194 (52.06%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD--------APVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            WL +GLGNPG +Y  TRHN GF  +DAFA   GI+          G  F GD          + L KP T+MN SG++   L  YY++PL  +L+ HDD+ LP GV               + ++N   G R+F RLR+G+G P    D  +++L + +   R+ I+ A+  G+EVL  +L+  + ++    H+
Sbjct:    6 WLLIGLGNPGTEYAQTRHNAGFWWLDAFASELGINFKP-------GAKFFGDYARANWRGHDLWLLKPATFMNRSGQAVLALLNYYQIPLEHLLIAHDDLDLPPGVAKLKRAGGHGGHNGLRDIINRL-GRRDFLRLRLGVGHPGSGQDVVSYVLNRPSREDRQAIEAAIGAGLEVLPEVLAGEMEKAMHRLHS 191          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOTE (Peptidyl-tRNA hydrolase OS=Clostridium tetani GN=pth PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.863e-26
Identity = 65/188 (34.57%), Postives = 101/188 (53.72%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            +L VGLGNPG +Y+ TRHN+GFE +D  +    I +     K  FG G + +  V+L KP TYMNLSGES   +  YY +P+  V+V +DD+ L  G                KS++ N   + +F RLRIG+G+P  Q D  + +L KF     + I+  L+   E+   ++++G  E+   ++  +
Sbjct:    2 FLLVGLGNPGKEYEKTRHNIGFEAVDKISYEYNIPIKRERFKGVFGDGRISNEKVILLKPTTYMNLSGESLREIIEYYNIPITNVIVIYDDVDLEVGRLRIRTKGSAGGHNGIKSIIYNL-NSEDFIRLRIGVGKP--QRDMVSHVLGKFAKEDEKNIEEVLKIIPELAYTIINQGPQEAMNKYNNFR 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_SYNAS (Peptidyl-tRNA hydrolase OS=Syntrophus aciditrophicus (strain SB) GN=pth PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26
Identity = 63/149 (42.28%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKF 783
            L VGLGNPG +Y+ TRHN GF ++D  AE Q I M+     A +G+G +    VLLAKPQT+MNLSG+S   LA ++K+ +  VLV HDD+ LP GV                S+ ++  G  EF R+R+GIG+P  +   + ++L+ F
Sbjct:    3 LIVGLGNPGARYRFTRHNFGFFVLDQLAEDQDIMMSQTGFDALWGKGVIAGQSVLLAKPQTFMNLSGKSVRKLADFFKIVVEDVLVVHDDLDLPFGVIRLKAGGGQGGHKGLISICDSL-GGPEFQRVRLGIGKPAQRSAVERYVLEPF 150          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOBL (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=pth PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26
Identity = 62/188 (32.98%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            +L VGLGN G +YK TRHN+GF+++D  AE   I +N    K ++G+G +G+  ++L KP TYMNLSGES    A +YK+    ++V +DDM +  G                K+++ +   +  F R+R+GIG+P   +    ++L KF+   RE I+  L    +    ++  G+TE+   ++ ++
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOBJ (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=pth PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26
Identity = 62/188 (32.98%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            +L VGLGN G +YK TRHN+GF+++D  AE   I +N    K ++G+G +G+  ++L KP TYMNLSGES    A +YK+    ++V +DDM +  G                K+++ +   +  F R+R+GIG+P   +    ++L KF+   RE I+  L    +    ++  G+TE+   ++ ++
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOBH (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26
Identity = 62/188 (32.98%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            +L VGLGN G +YK TRHN+GF+++D  AE   I +N    K ++G+G +G+  ++L KP TYMNLSGES    A +YK+    ++V +DDM +  G                K+++ +   +  F R+R+GIG+P   +    ++L KF+   RE I+  L    +    ++  G+TE+   ++ ++
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOB6 (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=pth PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26
Identity = 62/188 (32.98%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            +L VGLGN G +YK TRHN+GF+++D  AE   I +N    K ++G+G +G+  ++L KP TYMNLSGES    A +YK+    ++V +DDM +  G                K+++ +   +  F R+R+GIG+P   +    ++L KF+   RE I+  L    +    ++  G+TE+   ++ ++
Sbjct:    2 YLVVGLGNIGKEYKQTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOB1 (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26
Identity = 62/188 (32.98%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            +L VGLGN G +YK TRHN+GF+++D  AE   I +N    K ++G+G +G+  ++L KP TYMNLSGES    A +YK+    ++V +DDM +  G                K+++ +   +  F R+R+GIG+P   +    ++L KF+   RE I+  L    +    ++  G+TE+   ++ ++
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_ANADE3.724e-2637.43Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalo... [more]
PTH_ANAD23.724e-2638.29Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalo... [more]
PTH_NITOC4.863e-2634.54Peptidyl-tRNA hydrolase OS=Nitrosococcus oceani (s... [more]
PTH_CLOTE4.863e-2634.57Peptidyl-tRNA hydrolase OS=Clostridium tetani GN=p... [more]
PTH_SYNAS8.296e-2642.28Peptidyl-tRNA hydrolase OS=Syntrophus aciditrophic... [more]
PTH_CLOBL8.296e-2632.98Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOBJ8.296e-2632.98Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOBH8.296e-2632.98Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOB68.296e-2632.98Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOB18.296e-2632.98Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
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