FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_PELCD (Peptidyl-tRNA hydrolase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=pth PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.083e-25
Identity = 61/184 (33.15%), Postives = 99/184 (53.80%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L VGLGNPG +Y  TRHN+GF +   FA+  G+S+     +   G G       ++  PQTYMN SG S         + +  V+V HD++ LP G                +S++ +  G R+F R+R+G+GRP GQ+D   ++L +F++  + ++D  L+  V+ L++LL KG  ++   F+
Sbjct:    3 LVVGLGNPGPEYAATRHNIGFLVAQKFAQQMGVSLKRQAYQGIVGTGRADGQETMVLLPQTYMNRSGVSVVSACKSKGIAVEDVVVIHDEIDLPFGSIRIKVGGGHGGHNGLRSIV-DLLGCRDFLRVRMGVGRPQGQVDVAKYVLGQFSSTEKSQLDNVLENSVKALEVLLQKGAQQAMNEFN 185          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOBM (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=pth PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.083e-25
Identity = 62/188 (32.98%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            +L VGLGN G +YK TRHN+GF+++D  AE   I +N    K ++G+G +G+  ++L KP TYMNLSGES    A +YK+    ++V +DDM +  G                K+++ +   +  F R+R+GIG+P   +    ++L KF+   RE I+  L    +    ++  G+TE+   ++ ++
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIVAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDQREVIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_RENSM (Peptidyl-tRNA hydrolase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=pth PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.415e-25
Identity = 63/192 (32.81%), Postives = 103/192 (53.65%), Query Frame = 1
Query:  322 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG--FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPP-GQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            ++  WL VGLGNPG  Y  TRHN+GF + +  A   G S  +   +A   +G   +G   ++LAKPQT+MNLSG  T  LA +Y L  + V+   D++ +P                  + + +   G +E+ R+R+G+GRPP GQ D    +L+ F+   ++ +   +Q+  + ++LL+S GL  + + FH
Sbjct:    1 MSNTWLVVGLGNPGPDYSHTRHNIGFMVAEELASRIGASFKSNKSRALVAEGRLGMGGPKLVLAKPQTFMNLSGGPTSALAKFYDLGADNVIAVQDEIDIPFNTIKLKIGGGEGGHNGLRDI-SKALGAKEYLRVRVGVGRPPGGQGDAAGHVLKVFSTAEKKELPFLIQDAADAVELLISDGLLAAQQKFH 191          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOPH (Peptidyl-tRNA hydrolase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=pth PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.415e-25
Identity = 62/176 (35.23%), Postives = 97/176 (55.11%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 861
            ++ +GLGNP  +Y+ TRHN+GF+ I   A+   IS++T   KA  G+G +G   V+LAKPQTYMNLSGES   L  +YK+    ++V +DD+ L  G                K+++ +  G+ EF R++IG+G  P   D   ++L +F       I  AL++  +  + +L  G
Sbjct:    2 YIIIGLGNPTREYEATRHNIGFDAITRLADDNNISLDTKKHKAICGKGMIGGEKVILAKPQTYMNLSGESVRELIDFYKVTKEEIIVIYDDISLDVGQLRIRTKGSAGGHNGIKNIIAHL-GSDEFCRIKIGVGDKPKNWDLADYVLARFPKEEEPAIREALEKVSKACETILRDG 176          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_SYNJA (Peptidyl-tRNA hydrolase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pth PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.848e-25
Identity = 68/187 (36.36%), Postives = 96/187 (51.34%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894
            L VGLGNPG +Y  TRHN GF ++D  AE  GI +      + ++G+GF       L KP+TYMN SGE+   +  +YKL    VLV +DDM LP G                KSV+ +  G+  F RLR+G+GRP G  D    +L  F    +  +D  L+  V  ++  L +GL  +   F+ +
Sbjct:   16 LIVGLGNPGPQYANTRHNCGFMVVDQLAERWGIPLALEKRFQGSYGEGFALGGKRRLLKPETYMNRSGEAVRAVLDWYKLDPASVLVVYDDMDLPLGRLRLRGSGSAGGHNGMKSVIEHL-GSEAFPRLRLGVGRPKGNQDRVGHVLGSFEPAEQAVLDRVLRAAVAAVECCLQEGLKTAMNRFNPL 201          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOPE (Peptidyl-tRNA hydrolase OS=Clostridium perfringens GN=pth PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.848e-25
Identity = 65/186 (34.95%), Postives = 101/186 (54.30%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894
            L VGLGNPG +Y+ TRHN+GF++ID  A    I +N    K   G+GF+ +  V+L KP TYMNLSGES   LA +YKL  + ++V +DD+ L  G                KS++ N  G++ F R+++G+G+P   +     +L KF+   RE I+  +    + +  ++     ES   F+ +
Sbjct:    3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPLTYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESMNKFNGV 185          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOP1 (Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.848e-25
Identity = 65/186 (34.95%), Postives = 101/186 (54.30%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894
            L VGLGNPG +Y+ TRHN+GF++ID  A    I +N    K   G+GF+ +  V+L KP TYMNLSGES   LA +YKL  + ++V +DD+ L  G                KS++ N  G++ F R+++G+G+P   +     +L KF+   RE I+  +    + +  ++     ES   F+ +
Sbjct:    3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPLTYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESMNKFNGV 185          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_ROSS1 (Peptidyl-tRNA hydrolase OS=Roseiflexus sp. (strain RS-1) GN=pth PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.414e-25
Identity = 62/178 (34.83%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 864
            WL VGLGNPGD Y  TRHN+GF ++   A+   +        A   +G +    V LA PQTYMNLSG++   L  +YK+ P   +LV +DD+ LP GV               +S++    G++ F RLRIGI RPP   D   ++L +F      ++   +Q+  + L+ ++ +G+
Sbjct:    2 WLIVGLGNPGDTYARTRHNIGFRVVSELAQRHRLEFTHKRAHARIAEGIIAGQRVALALPQTYMNLSGQAVVGLRQWYKIDPATELLVVYDDVDLPFGVLRLRERGSAGTHNGMRSII-TLLGSQVFPRLRIGIDRPPPAWDLADYVLGRFTPEQEAQLPDIMQKAADALETVVREGM 178          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BREBN (Peptidyl-tRNA hydrolase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=pth PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.414e-25
Identity = 63/188 (33.51%), Postives = 97/188 (51.60%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQK 900
            + +GLGNPG KY+ TRHN GF  ID  ++  GI +     +A  G+G +    VLL KPQTYMNLSGES   +  +YKL  + ++V +DD+ LP G                KS++ +  G +EF R+++GI RP        ++L  F    R  I  A+    +   +   +   +   HF++++K
Sbjct:    3 VIIGLGNPGKKYEDTRHNAGFMAIDKISDKWGIPVTQNKFRALVGEGRIEGEKVLLVKPQTYMNLSGESVAEVLKFYKLIPDDLVVIYDDLDLPTGHLRLREKGSAGGHNGIKSMIQHL-GTQEFKRIKVGISRPEPGRSVSDYVLNTFPVAERADIQEAVSLAADACAMWTRESFLKVMNHFNSLKK 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_EXISA (Peptidyl-tRNA hydrolase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=pth PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 63/163 (38.65%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  343 VGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGV 831
            VGLGNPG K++ TRHNVGF  ID  AE  GIS+N     A  G G +    V+L KP TYMNLSGE+  P+  YYK+ ++ +LV +DD+ +  G                KS++ +  G  EF RL++GIGRPP  +    ++L  +       ++  L   V
Sbjct:    5 VGLGNPGKKFEMTRHNVGFLAIDRLAEKHGISLNEAKFNALMGTGRINGERVVLVKPLTYMNLSGEAVRPILDYYKIEIDDLLVIYDDLDMVPGKLRFRPKGSAGGHNGIKSLIQHL-GTAEFKRLKLGIGRPPHPIKVVDWVLMNYRKDELPELNETLDNAV 166          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_PELCD1.083e-2533.15Peptidyl-tRNA hydrolase OS=Pelobacter carbinolicus... [more]
PTH_CLOBM1.083e-2532.98Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_RENSM1.415e-2532.81Peptidyl-tRNA hydrolase OS=Renibacterium salmonina... [more]
PTH_CLOPH1.415e-2535.23Peptidyl-tRNA hydrolase OS=Clostridium phytofermen... [more]
PTH_SYNJA1.848e-2536.36Peptidyl-tRNA hydrolase OS=Synechococcus sp. (stra... [more]
PTH_CLOPE1.848e-2534.95Peptidyl-tRNA hydrolase OS=Clostridium perfringens... [more]
PTH_CLOP11.848e-2534.95Peptidyl-tRNA hydrolase OS=Clostridium perfringens... [more]
PTH_ROSS12.414e-2534.83Peptidyl-tRNA hydrolase OS=Roseiflexus sp. (strain... [more]
PTH_BREBN2.414e-2533.51Peptidyl-tRNA hydrolase OS=Brevibacillus brevis (s... [more]
PTH_EXISA4.117e-2538.65Peptidyl-tRNA hydrolase OS=Exiguobacterium sp. (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
back to top