FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYXXD (Peptidyl-tRNA hydrolase OS=Myxococcus xanthus (strain DK 1622) GN=pth PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 64/190 (33.68%), Postives = 100/190 (52.63%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKA------FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L VGLGNPG +Y+  RHN+GF +++A        +N     A  GQG +    VL  +PQT+MNLSG S    A ++K+P+  VLV HD++ LP G                KS++++  G+  F RLR GIG+P G   P A      ++L  F+   R  +D  +   +++ +L + +GL+ +   F+
Sbjct:    3 LIVGLGNPGREYERHRHNIGFMVVEALLSRARAQLNQEKFAAKVGQGTLAGERVLFVEPQTFMNLSGRSVAEAARFFKVPVADVLVIHDELDLPLGRLQLKAGGGSGGHNGLKSIVSSL-GDESFIRLRFGIGKPEG---PNARERVSDYVLSNFDDGERREMDALIDRAMDMTELWIREGLSVAMNRFN 188          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_GEOTN (Peptidyl-tRNA hydrolase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=pth PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 59/149 (39.60%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKF 783
            LFVGLGNPG +Y+ TRHN+GF +ID  A+   +S+ T   +  FG   V    V L KP TYMNLSGE   PL  +Y + ++ V++ +DD+ LP G                KS++++  G  +F R+RIGIGRP        ++L +F
Sbjct:    3 LFVGLGNPGKEYEQTRHNIGFFVIDELAKRWNVSLKTAKFRGLFGTASVFGEKVALCKPLTYMNLSGECVCPLIDFYDIAVDDVIIIYDDLDLPPGKIRLRLKGGSGGHNGVKSIIHHL-GTEQFKRIRIGIGRPTNGQPVADYVLSRF 150          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOPS (Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain SM101 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 63/186 (33.87%), Postives = 99/186 (53.23%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894
            L VGLGNPG +Y+ TRHN+GF++ID  A    I +N    K   G+GF+ +  V+L KP TYMNLSGES      +YKL  + ++V +DD+ L  G                KS++ N  G++ F R+++G+G+P   +     +L KF+   RE I+  +    + +  ++     ES   F+ +
Sbjct:    3 LIVGLGNPGKQYEKTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPLTYMNLSGESIREFVNFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESMNKFNGV 185          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_ALKMQ (Peptidyl-tRNA hydrolase OS=Alkaliphilus metalliredigens (strain QYMF) GN=pth PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 57/136 (41.91%), Postives = 82/136 (60.29%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRP 741
            ++ VGLGNPG KY GTRHNVGF++ID  A   GI++N +  KA +G+  +G   V+LAKPQT+MNLSGES   +  +YK+    ++V +DD+ +  G                KS +   + +  F R+RIG+GRP
Sbjct:    2 YIIVGLGNPGKKYSGTRHNVGFDVIDLLAHRLGITVNKLKHKALYGEARIGGEKVILAKPQTFMNLSGESIREMMQFYKIDPENLIVIYDDIDVKVGSLRIRQSGSAGTHNGMKSTIYQLQTD-AFPRIRIGVGRP 136          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_ROSCS (Peptidyl-tRNA hydrolase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pth PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.669e-24
Identity = 62/178 (34.83%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 864
            WL VGLGNPG+ Y  TRHN+GF ++   A+   +       KA   +G +    V LA PQTYMNLSG++   L  +YK+ P   +LV +DD+ LP GV               +S++    G++ F RLRIGI RPP   +   ++L +F      ++    +   + L+L+L +G+
Sbjct:    2 WLIVGLGNPGETYARTRHNIGFRVVTELAQRHHLRFTHKRAKAEIAEGEIAGQRVALALPQTYMNLSGQAVVGLRQWYKIDPATELLVVYDDVDLPFGVLRLRERGSAGTHNGMRSIV-ALLGSQVFPRLRIGIDRPPVAWNLADYVLARFTPEQEAQLPEVTRRAADALELVLREGI 178          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCLE (Peptidyl-tRNA hydrolase OS=Mycobacterium leprae GN=pth PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.669e-24
Identity = 68/188 (36.17%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            P L VGLGNPG  Y  TRHNVGF + +  A   G S   VH +  A    G +    +L+AKP+ YMN SG+  G LA  Y +    +++ HDD+ L  G                +SV     G ++F R+RIGIGRP G+ DP +F+L+ F    R ++ T  +   +  +LL+  GL  +  H H
Sbjct:   12 PRLVVGLGNPGKNYGRTRHNVGFMVANLLAVRLG-SKFEVHKRSGADVVNGRLAGCSMLVAKPRNYMNESGQQVGLLAKLYSVTPADIIIVHDDLDLDFGRIRLKLGGGEGGHNGLRSVAAAL-GTKDFQRVRIGIGRPTGRKDPASFVLENFTTAERMQVPTICKRAADATELLVGLGLEPAQNHVH 197          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCLB (Peptidyl-tRNA hydrolase OS=Mycobacterium leprae (strain Br4923) GN=pth PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.669e-24
Identity = 68/188 (36.17%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            P L VGLGNPG  Y  TRHNVGF + +  A   G S   VH +  A    G +    +L+AKP+ YMN SG+  G LA  Y +    +++ HDD+ L  G                +SV     G ++F R+RIGIGRP G+ DP +F+L+ F    R ++ T  +   +  +LL+  GL  +  H H
Sbjct:   12 PRLVVGLGNPGKNYGRTRHNVGFMVANLLAVRLG-SKFEVHKRSGADVVNGRLAGCSMLVAKPRNYMNESGQQVGLLAKLYSVTPADIIIVHDDLDLDFGRIRLKLGGGEGGHNGLRSVAAAL-GTKDFQRVRIGIGRPTGRKDPASFVLENFTTAERMQVPTICKRAADATELLVGLGLEPAQNHVH 197          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_LEIXX (Peptidyl-tRNA hydrolase OS=Leifsonia xyli subsp. xyli GN=pth PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.669e-24
Identity = 62/188 (32.98%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFV--GDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            WL VGLGNPG  Y  TRHNVG  ++D  A    +S  T    AT  +G +  G    +LAKP TYMN SG     L  +Y L  +R++V  D++ +P                  + V+    G+ +F R+R+G+GRPPG       +L+ F+A  R+ +   + +  + ++ + ++GLT +   FHT
Sbjct:    5 WLVVGLGNPGPGYAATRHNVGQLVLDELASRDRLSFKTHKTNATVAEGRIVPGGPRFVLAKPNTYMNGSGGPVSQLLRFYSLEPSRLIVVQDELDIPFDTLRLKFGGGHGGHNGVRDVIAEV-GSGDFTRVRVGVGRPPGVQAAADHVLKGFSAAERKNLPILVADAADAVERIAAEGLTAAQNRFHT 191          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACHD (Peptidyl-tRNA hydrolase OS=Bacillus halodurans GN=pth PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.669e-24
Identity = 61/184 (33.15%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L VGLGNPG KY GTRHNVGF+++DA A    I +        +G+G +    + L KPQT+MN SGES  P   YY + +  +LV +DD+ LP G                KS++ +  G  +F R+R+G+ RP         +L ++    ++ I  A+    E  +    K   E    F+
Sbjct:    3 LIVGLGNPGAKYDGTRHNVGFDVVDAVARRLNIEIKQSKANGLYGEGRIDGEKIFLLKPQTFMNRSGESVRPFLEYYNMEVEDLLVIYDDLDLPVGKIRLRQKGSAGGHNGMKSLIAHL-GTSDFKRIRVGVDRPAPGETVVQHVLGRYRPEEKDAISEAIDLSAEAAEAFTKKPFLEVMNTFN 185          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_THEPX (Peptidyl-tRNA hydrolase OS=Thermoanaerobacter sp. (strain X514) GN=pth PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.945e-24
Identity = 62/185 (33.51%), Postives = 100/185 (54.05%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            ++  GLGNPG +Y+GTRHNVGF +ID  A+  G+++  +  K+  G+G      ++L KPQT+MN SGE+      +YK+PL  V+V +DD  L  G                 S++     + EF R+RIGIG+P  Q D  + +L KF    ++ ID A+ +  + +  ++  G+  +   F+
Sbjct:    2 YVIAGLGNPGREYEGTRHNVGFMVIDELAKKLGMNVTKLKFKSLVGEGNFKGEKIILLKPQTFMNSSGEALYDAVNFYKIPLENVIVIYDDKDLDLGKIRIRKKGSSGGHNGMNSII-YLLNSEEFPRVRIGIGKP--QKDLVSHVLGKFEESEKKLIDEAVIKAADAVIDIIENGIEHAMSKFN 183          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_MYXXD1.565e-2433.68Peptidyl-tRNA hydrolase OS=Myxococcus xanthus (str... [more]
PTH_GEOTN1.565e-2439.60Peptidyl-tRNA hydrolase OS=Geobacillus thermodenit... [more]
PTH_CLOPS1.565e-2433.87Peptidyl-tRNA hydrolase OS=Clostridium perfringens... [more]
PTH_ALKMQ1.565e-2441.91Peptidyl-tRNA hydrolase OS=Alkaliphilus metallired... [more]
PTH_ROSCS2.669e-2434.83Peptidyl-tRNA hydrolase OS=Roseiflexus castenholzi... [more]
PTH_MYCLE2.669e-2436.17Peptidyl-tRNA hydrolase OS=Mycobacterium leprae GN... [more]
PTH_MYCLB2.669e-2436.17Peptidyl-tRNA hydrolase OS=Mycobacterium leprae (s... [more]
PTH_LEIXX2.669e-2432.98Peptidyl-tRNA hydrolase OS=Leifsonia xyli subsp. x... [more]
PTH_BACHD2.669e-2433.15Peptidyl-tRNA hydrolase OS=Bacillus halodurans GN=... [more]
PTH_THEPX5.945e-2433.51Peptidyl-tRNA hydrolase OS=Thermoanaerobacter sp. ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
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