FC877997

Overview
NameFC877997
Unique NameFC877997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2B_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus GN=Rrm2b PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.037e-89
Identity = 160/236 (67.80%), Postives = 190/236 (80.51%), Query Frame = 2
Query:   50 EEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            EEPL   +  RF +FPI YP+IW MY++A+ASFWTAEEV LS+DLP W  L + EK+FI+H+LA FA SDGIV ENL  RF +EVQV EAR FYGFQI IEN+HSEMYSLL++TYI++  ++  LF A ET+P V KKADWAL WI D   TF ER++AFA VEGIFFSGSF AIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L NK SE+RV  I+ +AV+IE+EF+
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEDRVREIIADAVQIEQEFL 266          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_TRYBB (Ribonucleoside-diphosphate reductase small chain OS=Trypanosoma brucei brucei GN=RNR2 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.769e-89
Identity = 157/236 (66.53%), Postives = 183/236 (77.54%), Query Frame = 2
Query:   50 EEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY-SLLRNKLSEERVMGIVKEAVEIEREFV 754
            EEPL T NPDR+ +FPI YP+IW+ Y++AE+S WT EE+ L  D+  WE L   E+HFI HVLA FA SDGIVLENLA RFM EVQV E R FYGFQIA+ENIHSE YS+L++TY+ + DEK RL  A  T+PC+ KKA WA+ WI    +F  RL+AFA VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH DFACLLY   + NKL  +RV+ I+  AV IEREF+
Sbjct:   16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTSFPTRLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKYIVNKLPRDRVLEIICNAVSIEREFI 251          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_NEUCR (Ribonucleoside-diphosphate reductase small chain OS=Neurospora crassa GN=rnr-2 PE=3 SV=2)

HSP 1 Score: 323.939 bits (829), Expect = 5.692e-88
Identity = 160/244 (65.57%), Postives = 190/244 (77.87%), Query Frame = 2
Query:   29 TKMPSIPEEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWES-LTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            T  P    EPL T NP RF LFPI Y EIW+MY+KAEASFWTAEE+ LS+DL  W + L   EK FI+H+LA FA SDGIV ENL  RF  EVQ+ EAR FYGFQI +ENIHSE YSLL++TYIK   +++ LF A +T+PC+ KKADWAL WI D S TFA+RL+AFA VEGIFFSG+F +IFWLKKRGLMPGLTFSNELISRDEGLH DFACLL+S L N+ S++ +  I+ +AV IE+EF+
Sbjct:   69 TLKPEEANEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSSTFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNNRPSKQLIQEIIVDAVRIEQEFL 312          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_LEIAM (Ribonucleoside-diphosphate reductase small subunit OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.831e-86
Identity = 152/245 (62.04%), Postives = 188/245 (76.73%), Query Frame = 2
Query:   23 KITKMPSIPEEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY-SLLRNKLSEERVMGIVKEAVEIEREFV 754
            K+ +  +  EEPL   NP R+ LFPI Y +IW  Y++ E+  WT EE+ L  D+  W +L   E+HFI HVLA FA SDGIV+ENLA RFM +V+V EARAFYGFQ+ +ENIHSE YS+LL+TYI +S+EK RL  A +T+PC+ KKA+W + WI  S +F +RLI FA VEGIFFSGSFCA+FWLKKRGLMPGLTFSNELISRDEGLH DFACLLY S +++KL  ERV+ I+ +AV IEREF+
Sbjct:   15 KVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIGSSASFQQRLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYNSHIKHKLPRERVLEIIVDAVNIEREFI 259          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_DROME (Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila melanogaster GN=RnrS PE=1 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.187e-85
Identity = 152/235 (64.68%), Postives = 186/235 (79.15%), Query Frame = 2
Query:   53 EPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG-SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            EPL   NP RF +FPI Y +IW+MY+KAEASFWT EEV LS+DL  W  L   E+HFI+HVLA FA SDGIV ENL  RF +EVQ++EAR FYGFQIA+EN+HSEMYS+L++TYI++  ++  LF A ET+P V +KADWAL+WI   S  F ER+IAFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFA L++  L  +   ER++ I+++AV IE+EF+
Sbjct:   74 EPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDAVAIEQEFL 308          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_PLAF4 (Ribonucleoside-diphosphate reductase small chain OS=Plasmodium falciparum (isolate Dd2) GN=RNR2 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.453e-85
Identity = 148/234 (63.25%), Postives = 182/234 (77.78%), Query Frame = 2
Query:   53 EPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            E +     DRF L+PI YP++W+ Y+KAEASFWTAEE+ LS DL  +E L  +EKHFI HVLA FA SDGIVLENLA++F++EVQ++EA+ FY FQIA+ENIHSE YSLL++ YIK+  E+  LF A E +P V  KA WA  WI+ + +FAER++A ACVEGI FSGSFCAIFW KK+  + GLTFSNELISRDEGLH DF CL+YSLL NKL E+ +  IVKEAVE+ER F+
Sbjct:   31 EKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPEQIIQNIVKEAVEVERSFI 264          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_SWPVK (Ribonucleoside-diphosphate reductase small chain OS=Swinepox virus (strain Kasza) GN=C14L PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.714e-84
Identity = 148/234 (63.25%), Postives = 184/234 (78.63%), Query Frame = 2
Query:   53 EPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            EP+   +  RF +FPI Y +IW+MY+++ ASFWT EEV LS+DL  W+ LT  EK+FI H+LA FA SDGIV ENLA RF  +VQ SEAR FYGFQIA+ENIHSEMYSLL++TY++++ EK  LF A ET+ CV KKADWA  WI  ++ + ER++AFA VEGIFFSGSF AIFW+KKRGLMPGLTFSNELISRDEGLHCDFACL++  L +  S+E +  I+ +AV IE+EF+
Sbjct:    2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDWDKLTKDEKYFIKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIETMECVKKKADWARKWISSNKVYGERVVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHPPSKEVITSIIIDAVNIEKEFL 235          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_ENCCU (Ribonucleoside-diphosphate reductase small chain OS=Encephalitozoon cuniculi GN=ECU06_0730 PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.961e-82
Identity = 150/235 (63.83%), Postives = 185/235 (78.72%), Query Frame = 2
Query:   53 EPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            E L  P  +RF L PI Y +IW+MY+KAE+SFWT EEV L +D+  W  L A E+HFI++VLA FA SDGIV  NL  RF  EV+V EAR FYGFQ+AIENIHSEMYSLL++TYI+++DEK+ LF A  T+P V +KADWA+ WI D +  FA RL+AFACVEGIFFSG+F +IFWLKKRGLMPGLTFSNELISRDEGLHC+FACLL+  L+ K +  R+  +V +AVEIE++F+
Sbjct:    8 ELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNAKERHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTYIRDNDEKNFLFDAIRTIPSVKEKADWAIRWIEDKNSDFATRLVAFACVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHYHLKKKCN--RIKEVVMDAVEIEKKFL 240          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_YLDV (Ribonucleoside-diphosphate reductase small chain OS=Yaba-like disease virus GN=20L PE=3 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.358e-81
Identity = 148/235 (62.98%), Postives = 181/235 (77.02%), Query Frame = 2
Query:   53 EPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG-SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            EP+  P  +++ +FPI Y +IW+MY+KA ASFWT EEV LS+D   W  L+ +EK+FI H+LA FA SDGIV ENLA RF  EVQ+SEAR FYGFQIA+ENIHSEMYSLL++TYI +S EK+ LF A E + CV +KA+WA  WI+  + T+ ERL+AFA VEGIFFSGSF AIFW+KKRGLMPGLTFSNELISRDEGLHCDFAC+++  L N      V  I+ EAV IE+ F+
Sbjct:    6 EPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLKLSDNEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIENMNCVKQKANWAKKWIESKNRTYGERLVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACIMFKHLLNPPLNSVVRDIIIEAVNIEKNFL 240          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_CAEEL (Ribonucleoside-diphosphate reductase small chain OS=Caenorhabditis elegans GN=rnr-2 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.774e-81
Identity = 149/236 (63.14%), Postives = 182/236 (77.12%), Query Frame = 2
Query:   50 EEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            +EP+     +RF +FP+ + +IW  Y+KA ASFWT EEV L +D+  WE +   E++FI+ +LA FA SDGIV ENL  RF  EVQVSEAR FYGFQIAIENIHSEMYS L+ETYI++  E++ LF A +    + KKADWAL WI D   +FAERLIAFA VEGIFFSGSF +IFWLKKRGLMPGLT SNELISRDEGLH DFACLLYS L+ KL+++R+  I+K+AV IE+EF+
Sbjct:   61 DEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIRDETERNTLFNAVDEFEFIKKKADWALRWISDKKASFAERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSKLQKKLTQQRIYDIIKDAVAIEQEFL 296          
The following BLAST results are available for this feature:
BLAST of FC877997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RIR2B_MOUSE1.037e-8967.80Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2_TRYBB1.769e-8966.53Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_NEUCR5.692e-8865.57Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_LEIAM1.831e-8662.04Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_DROME1.187e-8564.68Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_PLAF43.453e-8563.25Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_SWPVK1.714e-8463.25Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ENCCU7.961e-8263.83Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_YLDV1.358e-8162.98Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_CAEEL1.774e-8163.14Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA85CC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877997 ID=FC877997; Name=FC877997; organism=Citrus clementina; type=EST; length=755bp
CCTAAACCTAGTATTAACCTTGAAAATTACCAAAATGCCCTCCATCCCCG
AAGAGCCCCTGCCAACCCCCAACCCCGACCGATTCCGCCTGTTTCCCATC
CCGTACCCGGAAATCTGGGAAATGTACCAGAAAGCCGAAGCTTCCTTTTG
GACGGCGGAGGAGGTCCACCTGTCCCAGGACCTCCCCCAGTGGGAATCCC
TAACCGCCCACGAGAAACACTTCATCACGCACGTGCTCGCCCTCTTCGCC
CCCTCGGATGGAATCGTCCTCGAAAACCTCGCCGCCAGGTTCATGAAAGA
AGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATCG
AGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAA
AACTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTG
CGTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGA
CATTCGCGGAGAGACTGATAGCGTTTGCCTGCGTGGAAGGGATATTCTTC
TCGGGCAGTTTCTGCGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCC
GGGCCTAACCTTCTCGAACGAGCTAATCTCGCGAGATGAAGGACTCCACT
GCGATTTCGCGTGCTTGTTGTACAGCTTGCTGAGGAACAAATTAAGCGAG
GAGCGCGTGATGGGGATAGTGAAGGAGGCGGTGGAGATAGAGAGGGAGTT
CGTGT
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