FC877997

Overview
NameFC877997
Unique NameFC877997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR4_YEAST (Ribonucleoside-diphosphate reductase small chain 2 OS=Saccharomyces cerevisiae GN=RNR4 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.607e-50
Identity = 101/235 (42.98%), Postives = 154/235 (65.53%), Query Frame = 2
Query:   50 EEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSET-FAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREF 751
            +E L   N  RF +FPI Y EIW  Y+K EASFWTAEE+ L++D   ++ LT  +K +I ++LAL   SD +V + L   F  ++Q  E ++FYGFQI +ENI+SE+YS++++ + K+  +   LF+    +P V  KA +   WI   ++ +AERL+AFA  EGIF +G++ ++FWL  + +MPGL  +N  I RD G + DF+CLL++ LR K + + +  I+ EAVEIE+E+
Sbjct:   24 DEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKD-PKNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEY 257          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_OSHV1 (Ribonucleoside-diphosphate reductase small chain OS=Ostreid herpesvirus 1 GN=ORF20 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.440e-24
Identity = 73/229 (31.88%), Postives = 113/229 (49.34%), Query Frame = 2
Query:   77 DRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAF---ETVPCVAKKADWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREF 751
            D   L P  Y ++ +   K E+S W   E+    D+P WE ++ +E+  +  VLA FA  D +V + +A  F  E  + E + F  +Q   E +H  +Y+  L+  +K+    + L  A+   E  P + KK DW    I   +++  E ++   C E I F+ SF AI    +   M  L   NE I RDE LH  F   L  L+ ++ S+ER+  ++ EA EIE EF
Sbjct:   70 DHALLKPAVYQQLRDFATKMESSSWQQTEIDAESDIPTWEQISENERDCVRKVLAFFAVGDTLVKDRIAI-FADEFPLPECKDFIDWQTVNEGVHQRVYNNYLDALVKDKIYLADLVNAYKDPEFAP-IKKKVDWLGKIISVENDSRGEMVVGQVCTEAIMFAASF-AILLKFRAPYMRALVLGNEFIRRDETLHFRFYAELLRLMPDRPSDERIAELLTEATEIELEF 295          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_HHV11 (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 1 (strain 17) GN=UL40 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.335e-19
Identity = 66/233 (28.33%), Postives = 110/233 (47.21%), Query Frame = 2
Query:   68 PNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFE-TVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL---RNKLSEERVMGIVKEAVEIEREFV 754
            P+P+R+  +    P+I  +   +  + W   E+    D      L+  E  F   + A  + +D +V ENL        +  +   +Y  Q  IE +HS +Y+++      N+D+  R + A     P +  K DW    +    +  E+ I    +EGIFF+ SF AI +L+   L+     SN+LISRDE +H   +C +Y+       K   +RV G+ ++AVEIE  F+
Sbjct:   32 PDPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGHAKPPPDRVYGLFRQAVEIEIGFI 262          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_HHV2H (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 2 (strain HG52) GN=UL40 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 67/239 (28.03%), Postives = 113/239 (47.28%), Query Frame = 2
Query:   56 PLPT-PNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETV--PCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL---RNKLSEERVMGIVKEAVEIEREFV 754
            P+P  P P+R+  +    P+I  +   +  + W   E+    D      L+  E  F   + A  + +D +V ENL        +  +   +Y  Q  IE +HS +Y+++      N+D+  R + A  T+  P +  K DW    +   ++  E+ I    +EG+FF+ SF AI +L+   L+     SN+LISRDE +H   +C +Y+       K    RV  + +EAV+IE  F+
Sbjct:   24 PIPVCPTPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELGFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVA-RTINHPAIRVKVDWLEARVRECDSIPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGHAKPEAARVYRLFREAVDIEIGFI 259          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_HHV23 (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 2 (strain 333) PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 67/239 (28.03%), Postives = 113/239 (47.28%), Query Frame = 2
Query:   56 PLPT-PNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETV--PCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL---RNKLSEERVMGIVKEAVEIEREFV 754
            P+P  P P+R+  +    P+I  +   +  + W   E+    D      L+  E  F   + A  + +D +V ENL        +  +   +Y  Q  IE +HS +Y+++      N+D+  R + A  T+  P +  K DW    +   ++  E+ I    +EG+FF+ SF AI +L+   L+     SN+LISRDE +H   +C +Y+       K    RV  + +EAV+IE  F+
Sbjct:   24 PIPVCPTPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELGFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVA-RTINHPAIRVKVDWLEARVRECDSIPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGHAKPEAARVYRLFREAVDIEIGFI 259          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_HHV1K (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 1 (strain KOS) GN=UL40 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.134e-18
Identity = 66/233 (28.33%), Postives = 109/233 (46.78%), Query Frame = 2
Query:   68 PNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFE-TVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL---RNKLSEERVMGIVKEAVEIEREFV 754
            P+P+R+  +    P+I  +   +  + W   E+    D      L+  E  F   + A  + +D +V ENL        +  +   +Y  Q  IE  HS +Y+++      N+D+  R + A     P +  K DW    +    +  E+ I    +EGIFF+ SF AI +L+   L+     SN+LISRDE +H   +C +Y+       K   +RV G+ ++AVEIE  F+
Sbjct:   32 PDPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVAHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGHAKPPPDRVYGLFRQAVEIEIGFI 262          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_EBVG (Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr virus (strain GD1) GN=BaRF1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 58/206 (28.16%), Postives = 96/206 (46.60%), Query Frame = 2
Query:  149 WTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLF-RAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEER---VMGIVKEAVEIEREFV 754
            W A  + L++D    + L   +  F   +    A ++ +V  N+    +   +  +   +Y  Q A+EN+H E Y+ +L             +  A      +  K  W  + +  + T  E+++ F  +EGIFF  SF +I  L+ RGLMPG+  +N  ISRDE LH   A LLY+ +  K    R   +  + + AVE+E  F+
Sbjct:   25 WFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNID-ELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYNSMTAKADRPRATWIQELFRTAVEVETAFI 229          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_EBVB9 (Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr virus (strain B95-8) GN=BaRF1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 58/206 (28.16%), Postives = 96/206 (46.60%), Query Frame = 2
Query:  149 WTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLF-RAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEER---VMGIVKEAVEIEREFV 754
            W A  + L++D    + L   +  F   +    A ++ +V  N+    +   +  +   +Y  Q A+EN+H E Y+ +L             +  A      +  K  W  + +  + T  E+++ F  +EGIFF  SF +I  L+ RGLMPG+  +N  ISRDE LH   A LLY+ +  K    R   +  + + AVE+E  F+
Sbjct:   25 WFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNID-ELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYNSMTAKADRPRATWIQELFRTAVEVETAFI 229          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_EBVA8 (Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr virus (strain AG876) GN=BaRF1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 58/206 (28.16%), Postives = 96/206 (46.60%), Query Frame = 2
Query:  149 WTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLF-RAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEER---VMGIVKEAVEIEREFV 754
            W A  + L++D    + L   +  F   +    A ++ +V  N+    +   +  +   +Y  Q A+EN+H E Y+ +L             +  A      +  K  W  + +  + T  E+++ F  +EGIFF  SF +I  L+ RGLMPG+  +N  ISRDE LH   A LLY+ +  K    R   +  + + AVE+E  F+
Sbjct:   25 WFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNID-ELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYNSMTAKADRPRATWIQELFRTAVEVETAFI 229          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_SHV21 (Ribonucleoside-diphosphate reductase small chain OS=Saimiriine herpesvirus 2 (strain 11) GN=60 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.866e-17
Identity = 57/216 (26.39%), Postives = 107/216 (49.54%), Query Frame = 2
Query:  119 EMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRA-FETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL---RNKLSEERVMGIVKEAVEIEREFV 754
            E+ ++   + W   +V L  D+   + L   +  F   +      ++ +V  N+    + +    +   +Y  Q+A+ENIH ++Y+ +L    KN+  +   +         + +K  W    +  +   AE+++ F  VEGIFF  SF +I   + RG+M G+  +N+ I+RDE LH   A LLY+ +     + SE+ +  + +EAVE+E +F+
Sbjct:   18 ELTKETWKNRWFPSQVPLQGDVCCVDMLNERDLEFYKFLFTFLGMAEKLVNINIED-LLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYACDIMNDSALQEKLRWLNGRVTEASDKAEKILLFLLVEGIFFISSFFSIGLFRVRGIMNGICLANDYIARDEMLHTSAAALLYNTMTKSSERPSEDWIYKLFREAVEVEFKFI 232          
The following BLAST results are available for this feature:
BLAST of FC877997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RIR4_YEAST3.607e-5042.98Ribonucleoside-diphosphate reductase small chain 2... [more]
RIR2_OSHV14.440e-2431.88Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HHV117.335e-1928.33Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HHV2H1.251e-1828.03Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HHV231.251e-1828.03Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HHV1K2.134e-1828.33Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EBVG2.360e-1728.16Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EBVB92.360e-1728.16Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EBVA82.360e-1728.16Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_SHV216.866e-1726.39Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA85CC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877997 ID=FC877997; Name=FC877997; organism=Citrus clementina; type=EST; length=755bp
CCTAAACCTAGTATTAACCTTGAAAATTACCAAAATGCCCTCCATCCCCG
AAGAGCCCCTGCCAACCCCCAACCCCGACCGATTCCGCCTGTTTCCCATC
CCGTACCCGGAAATCTGGGAAATGTACCAGAAAGCCGAAGCTTCCTTTTG
GACGGCGGAGGAGGTCCACCTGTCCCAGGACCTCCCCCAGTGGGAATCCC
TAACCGCCCACGAGAAACACTTCATCACGCACGTGCTCGCCCTCTTCGCC
CCCTCGGATGGAATCGTCCTCGAAAACCTCGCCGCCAGGTTCATGAAAGA
AGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATCG
AGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAA
AACTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTG
CGTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGA
CATTCGCGGAGAGACTGATAGCGTTTGCCTGCGTGGAAGGGATATTCTTC
TCGGGCAGTTTCTGCGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCC
GGGCCTAACCTTCTCGAACGAGCTAATCTCGCGAGATGAAGGACTCCACT
GCGATTTCGCGTGCTTGTTGTACAGCTTGCTGAGGAACAAATTAAGCGAG
GAGCGCGTGATGGGGATAGTGAAGGAGGCGGTGGAGATAGAGAGGGAGTT
CGTGT
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