FC877999
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 6.648e-31 Identity = 74/198 (37.37%), Postives = 109/198 (55.05%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776 K+FIGGL+ ET+ HF ++G +TD V+M+D T + RGFGFVTYA VD + T H ++G+ VE KR + + KKIFVGGI E +D+F Q+G+++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA PK+ S +R +G G GD +G Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGFG 211
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.648e-31 Identity = 81/223 (36.32%), Postives = 120/223 (53.81%), Query Frame = 3 Query: 189 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG--------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN-------------PKPAYGSGFG 764 GK+F+GGL T+ +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G S + K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ + P P + G+G Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 231 HSP 2 Score: 69.3218 bits (168), Expect = 2.627e-11 Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 3 Query: 144 EDDRSQPHTG-------DGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 422 + +R++P G D + KIF+GG+ + ++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P+ Sbjct: 91 QPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.134e-30 Identity = 81/223 (36.32%), Postives = 119/223 (53.36%), Query Frame = 3 Query: 189 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG--------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN-------------PKPAYGSGFG 764 GK+F+GGL T+ +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G S K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ + P P + G+G Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYG 231 HSP 2 Score: 69.3218 bits (168), Expect = 2.627e-11 Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 3 Query: 144 EDDRSQPHTG-------DGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 422 + +R++P G D + KIF+GG+ + ++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P+ Sbjct: 91 QPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.481e-30 Identity = 76/197 (38.58%), Postives = 112/197 (56.85%), Query Frame = 3 Query: 177 GASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG---------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLPQP 713 G GK+F+GGL T+ +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G +++ ++ KIFVGGIP + E E K++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P P Sbjct: 6 GDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKSQTPGP 201 HSP 2 Score: 68.1662 bits (165), Expect = 5.851e-11 Identity = 33/102 (32.35%), Postives = 58/102 (56.86%), Query Frame = 3 Query: 144 EDDRSQPHTG--------DGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 422 + +RS+P G + + KIF+GG+ + ++F ++G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P+ Sbjct: 91 QPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 192
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 9.600e-30 Identity = 72/184 (39.13%), Postives = 105/184 (57.07%), Query Frame = 3 Query: 150 DRSQPHTGDGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 692 DR H G+ K+FIGGL T+ +HF ++GEI D V+MKD KT + RGFGF+TY+ +VD H ++G+ VE KR +P+ +G + KK+FVGGI + E++ +D+F Q+G V I+ D T + RGF F+ FD VD + N ++ G ++VKKA PK Sbjct: 5 DRENDH-GEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNH-QIRGKHIDVKKALPK 186
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.223e-29 Identity = 71/200 (35.50%), Postives = 111/200 (55.50%), Query Frame = 3 Query: 105 DSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 695 +SN + + +DD Q + K+FIGGL T+ HF K+G I D V+MKD +T + RGFGF+TY+ S++D+ + H I+G+ VE KR +P+ + S + KK+FVG + +E +D+F FG + + I+ D T + RGF F+ FD VD ++ + + +L G V+VKKA PK+ Sbjct: 3 NSNQNQNGNSNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ-KQHQLNGKMVDVKKALPKQ 201
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.365e-28 Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776 K+FIGGL+ ET+ HF ++G +TD V+M+D T + RGFGFVTYA VD + H ++G+ VE KR + + KKIFVGGI E +D+F Q+G+++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R + +G G G +G Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 2.365e-28 Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776 K+FIGGL+ ET+ HF ++G +TD V+M+D T + RGFGFVTYA VD + H ++G+ VE KR + + KKIFVGGI E +D+F Q+G+++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R + +G G G +G Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 2.365e-28 Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776 K+FIGGL+ ET+ HF ++G +TD V+M+D T + RGFGFVTYA VD + H ++G+ VE KR + + KKIFVGGI E +D+F Q+G+++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R + +G G G +G Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5) HSP 1 Score: 125.946 bits (315), Expect = 2.365e-28 Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776 K+FIGGL+ ET+ HF ++G +TD V+M+D T + RGFGFVTYA VD + H ++G+ VE KR + + KKIFVGGI E +D+F Q+G+++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R + +G G G +G Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211 The following BLAST results are available for this feature:
BLAST of FC877999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 136
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877999 ID=FC877999; Name=FC877999; organism=Citrus clementina; type=EST; length=776bpback to top |