FC877999

Overview
NameFC877999
Unique NameFC877999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:15..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.648e-31
Identity = 74/198 (37.37%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +  T H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++ +     + G   EV+KA PK+      S +R       +G G GD +G
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGFG 211          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.648e-31
Identity = 81/223 (36.32%), Postives = 120/223 (53.81%), Query Frame = 3
Query:  189 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG--------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN-------------PKPAYGSGFG 764
            GK+F+GGL   T+      +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V  V+    H ++G+ ++ K   P+G                 S + K+ KIFVGGIP +  E E +++F +FG V E  ++ D    R RGFGFITF+ EQ+VD  +   +  ++ G +VEVK+AEP+  K   P QP   ++ +             P P +  G+G
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 231          

HSP 2 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  144 EDDRSQPHTG-------DGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 422
            + +R++P  G       D +   KIF+GG+       +  ++F K+G +T+ V++ D +  +PRGFGF+T+ D   VD+ +    H I GK+VE+KR  P+
Sbjct:   91 QPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.134e-30
Identity = 81/223 (36.32%), Postives = 119/223 (53.36%), Query Frame = 3
Query:  189 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG--------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN-------------PKPAYGSGFG 764
            GK+F+GGL   T+      +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V  V+    H ++G+ ++ K   P+G                 S   K+ KIFVGGIP +  E E +++F +FG V E  ++ D    R RGFGFITF+ EQ+VD  +   +  ++ G +VEVK+AEP+  K   P QP   ++ +             P P +  G+G
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYG 231          

HSP 2 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  144 EDDRSQPHTG-------DGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 422
            + +R++P  G       D +   KIF+GG+       +  ++F K+G +T+ V++ D +  +PRGFGF+T+ D   VD+ +    H I GK+VE+KR  P+
Sbjct:   91 QPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.481e-30
Identity = 76/197 (38.58%), Postives = 112/197 (56.85%), Query Frame = 3
Query:  177 GASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG---------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLPQP 713
            G   GK+F+GGL   T+      +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V  V+    H ++G+ ++ K   P+G                  +++ ++ KIFVGGIP +  E E K++F +FG V E  ++ D    R RGFGFITF+ EQ+VD  +   +  ++ G +VEVK+AEP+  K   P P
Sbjct:    6 GDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKSQTPGP 201          

HSP 2 Score: 68.1662 bits (165), Expect = 5.851e-11
Identity = 33/102 (32.35%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  144 EDDRSQPHTG--------DGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 422
            + +RS+P  G        + +   KIF+GG+       +  ++F ++G +T+ V++ D +  +PRGFGF+T+ D   VD+ +    H I GK+VE+KR  P+
Sbjct:   91 QPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 192          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.600e-30
Identity = 72/184 (39.13%), Postives = 105/184 (57.07%), Query Frame = 3
Query:  150 DRSQPHTGDGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 692
            DR   H G+     K+FIGGL   T+     +HF ++GEI D V+MKD KT + RGFGF+TY+   +VD       H ++G+ VE KR +P+  +G  +     KK+FVGGI   + E++ +D+F Q+G V    I+ D  T + RGF F+ FD    VD +    N  ++ G  ++VKKA PK
Sbjct:    5 DRENDH-GEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNH-QIRGKHIDVKKALPK 186          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.223e-29
Identity = 71/200 (35.50%), Postives = 111/200 (55.50%), Query Frame = 3
Query:  105 DSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 695
            +SN     + +  +DD  Q    +     K+FIGGL   T+      HF K+G I D V+MKD +T + RGFGF+TY+  S++D+  +   H I+G+ VE KR +P+  + S +     KK+FVG +    +E   +D+F  FG + +  I+ D  T + RGF F+ FD    VD ++ +  + +L G  V+VKKA PK+
Sbjct:    3 NSNQNQNGNSNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ-KQHQLNGKMVDVKKALPKQ 201          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.365e-28
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++ +     + G   EV+KA  K+      S +R  +    +G G G  +G
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.365e-28
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++ +     + G   EV+KA  K+      S +R  +    +G G G  +G
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.365e-28
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++ +     + G   EV+KA  K+      S +R  +    +G G G  +G
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 125.946 bits (315), Expect = 2.365e-28
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++ +     + G   EV+KA  K+      S +R  +    +G G G  +G
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211          
The following BLAST results are available for this feature:
BLAST of FC877999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
RA1L2_HUMAN6.648e-3137.37Heterogeneous nuclear ribonucleoprotein A1-like pr... [more]
DAZP1_HUMAN6.648e-3136.32DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1... [more]
DAZP1_MOUSE1.134e-3036.32DAZ-associated protein 1 OS=Mus musculus GN=Dazap1... [more]
DAZP1_XENLA1.481e-3038.58DAZ-associated protein 1 OS=Xenopus laevis GN=daza... [more]
ROA1_SCHAM9.600e-3039.13Heterogeneous nuclear ribonucleoprotein A1, A2/B1 ... [more]
ROA1_DROME6.223e-2935.50Heterogeneous nuclear ribonucleoprotein A1 OS=Dros... [more]
ROA1_PANTR2.365e-2835.86Heterogeneous nuclear ribonucleoprotein A1 OS=Pan ... [more]
ROA1_MOUSE2.365e-2835.86Heterogeneous nuclear ribonucleoprotein A1 OS=Mus ... [more]
ROA1_MACMU2.365e-2835.86Heterogeneous nuclear ribonucleoprotein A1 OS=Maca... [more]
ROA1_HUMAN2.365e-2835.86Heterogeneous nuclear ribonucleoprotein A1 OS=Homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ12YE02RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877999 ID=FC877999; Name=FC877999; organism=Citrus clementina; type=EST; length=776bp
CTTCCAATTAAACTTCTCTGTCTTCTCCTTCTTCACCGCCGTTATAACGT
CGCTTAAATCCAGAACCCATGGACCCAGAATCTAATGAAGGAATTGTTGA
CAGAGATTCTAACGACGTTCATAAATCGTCAGACCACCACCCAGAAGATG
ACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCCCTGGAAAAATTTTT
ATTGGAGGTTTAGCTAGAGAGACGTCGTCAGCTCAATTTATCAAGCATTT
CGGTAAATATGGTGAAATTACGGATTCTGTGATAATGAAGGACCGGAAAA
CGGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATGCTGATCCCTCTGTA
GTTGATAAAGTCATTGAAGACACTCACATTATTAATGGGAAACAGGTGGA
AATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTCTAAGGATTTCAAGA
CGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCGGTGAATGAAGATGAA
TTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAAGAGCACCAAATCAT
GCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGGATTTATCACTTTTG
ACACGGAGCAAGCAGTTGATGACCTTTTGGCAAAGGGTAACAAGCTTGAG
TTGGCTGGAGCCCAGGTGGAGGTCAAGAAAGCAGAACCAAAGAAACCAAA
CCTACCACAACCATCTTATAGGCGATACAATAATCCTAAACCCGCATATG
GTAGTGGCTTTGGAGATGCTTACGGT
back to top