FC877999

Overview
NameFC877999
Unique NameFC877999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:15..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.174e-25
Identity = 68/195 (34.87%), Postives = 102/195 (52.31%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGD 767
            K+FIGGL   T+      HF K+G I D V+MKD KT + RGFGF+TY+   ++D       H I+G+ VE KR +P+  + S +     KK+FVGG+    +E+  +++F  FG++    I+ D  T + RGF FI FD    VD ++ +     +    ++VKKA  K+    Q        P+     G GD
Sbjct:   25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTH-SIKNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGRGGQGD 218          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.451e-25
Identity = 66/200 (33.00%), Postives = 109/200 (54.50%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGS--GFGDAYG 776
            K+FIGGL+ ET+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD ++ +     + G   EV+KA      L +   +   + +   G   GFGD+ G
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKA------LSRQEMQEVQSSRSGRGGNFGFGDSRG 214          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.451e-25
Identity = 66/200 (33.00%), Postives = 109/200 (54.50%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGS--GFGDAYG 776
            K+FIGGL+ ET+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD ++ +     + G   EV+KA      L +   +   + +   G   GFGD+ G
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKA------LSRQEMQEVQSSRSGRGGNFGFGDSRG 214          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.451e-25
Identity = 66/200 (33.00%), Postives = 109/200 (54.50%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGS--GFGDAYG 776
            K+FIGGL+ ET+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD ++ +     + G   EV+KA      L +   +   + +   G   GFGD+ G
Sbjct:   10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKA------LSRQEMQEVQSSRSGRGGNFGFGDSRG 202          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.120e-25
Identity = 66/200 (33.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGS--GFGDAYG 776
            K+FIGGL+ ET+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD +  +     + G   EV+KA      L +   +   + +   G   GFGD+ G
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ-KYHTINGHNAEVRKA------LSRQEMQEVQSSRSGRGGNFGFGDSRG 214          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: HNDLA_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis GN=hnrpdl-A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.120e-25
Identity = 63/170 (37.06%), Postives = 100/170 (58.82%), Query Frame = 3
Query:  189 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 695
            GK+FIGGL+ +TS     ++  ++GE+ D  I  D  TG+ RGFGFV + D   VDKV+E + H ++GK ++ KR   K   G +    KK+FVGG+     E++ K +F  FGE++  ++  D  T+  RGF F+T+  E+ V  LL +    ++   + E+K A+PK+
Sbjct:   26 GKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLL-ESRFHQIGTGKCEIKAAQPKE 190          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.299e-25
Identity = 65/200 (32.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGS--GFGDAYG 776
            K+FIGGL+ +T+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD ++ +     + G   EV+KA      L +   +   + +   G   GFGD+ G
Sbjct:   10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKA------LSRQEMQEVQSSRSGRGGNFGFGDSRG 202          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.706e-24
Identity = 70/199 (35.18%), Postives = 112/199 (56.28%), Query Frame = 3
Query:  114 DVHKSSDHHPEDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 695
            D  K+ +     + S  HT   A+     K+FIGGL+ +T+      +F K+GE+ D  +  D  TG+ RGFGFV + +   VDKV++   H +NGK ++ KR     A+ +K+   KKIFVGG+     E++ +++F  FGEV+  ++  D+ T++ RGF FITF  E+ V  ++ K  K    G ++ E+K A  K+
Sbjct:   69 DASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 261          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA0_HUMAN (Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.027e-24
Identity = 64/172 (37.21%), Postives = 100/172 (58.14%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD-LLAKGNKLELAGAQVEVKKAEPKK 695
            K+FIGGL  +TS +    HF  +G +TD V++ + +T + R FGFVTY++    D  +  + H ++G  VE+KR + +   A      K KK+FVGG+   V E +  + F QFG V++ +I+ D  + + RGFGF+ F    A D   + K + ++  G +VEVKKA PK+
Sbjct:    8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQ--GHRVEVKKAVPKE 177          

HSP 2 Score: 67.3958 bits (163), Expect = 9.981e-11
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  174 DGASPG------KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 422
            D A PG      K+F+GGL  + +    I+HF ++G +  + I+ D+++G+ RGFGFV + +    DK  +   H I G +VE+K+ +PK
Sbjct:   87 DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPK 176          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: RO22_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.027e-24
Identity = 66/198 (33.33%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776
            K+FIGGL+ ET+       + ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   A        KK+FVGGI     E   +++F ++G+++  +I+ D  + + RGFGF+TF+    VD ++ +     + G   EV+KA  K+    Q      NN    +  GFGD+ G
Sbjct:   10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ-KYHTINGHNAEVRKALSKQE--MQDVQNTRNNRGGNF--GFGDSRG 202          

HSP 2 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 38/110 (34.55%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  156 SQPHTGDG--------------ASPG------KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 422
            ++PHT DG              A PG      K+F+GG+  +T      ++F +YG+I  + I+ D+++G+ RGFGFVT+ D   VDK V++  H ING   E+++ + K
Sbjct:   69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSK 178          
The following BLAST results are available for this feature:
BLAST of FC877999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
RB87F_DROME4.174e-2534.87Heterogeneous nuclear ribonucleoprotein 87F OS=Dro... [more]
ROA2_MOUSE5.451e-2533.00Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_HUMAN5.451e-2533.00Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_BOVIN5.451e-2533.00Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_RAT7.120e-2533.00Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
HNDLA_XENLA7.120e-2537.06Heterogeneous nuclear ribonucleoprotein D-like-A O... [more]
ROA2_SAGOE9.299e-2532.50Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
HNRPD_MOUSE2.706e-2435.18Heterogeneous nuclear ribonucleoprotein D0 OS=Mus ... [more]
ROA0_HUMAN6.027e-2437.21Heterogeneous nuclear ribonucleoprotein A0 OS=Homo... [more]
RO22_XENLA6.027e-2433.33Heterogeneous nuclear ribonucleoprotein A2 homolog... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE02RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877999 ID=FC877999; Name=FC877999; organism=Citrus clementina; type=EST; length=776bp
CTTCCAATTAAACTTCTCTGTCTTCTCCTTCTTCACCGCCGTTATAACGT
CGCTTAAATCCAGAACCCATGGACCCAGAATCTAATGAAGGAATTGTTGA
CAGAGATTCTAACGACGTTCATAAATCGTCAGACCACCACCCAGAAGATG
ACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCCCTGGAAAAATTTTT
ATTGGAGGTTTAGCTAGAGAGACGTCGTCAGCTCAATTTATCAAGCATTT
CGGTAAATATGGTGAAATTACGGATTCTGTGATAATGAAGGACCGGAAAA
CGGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATGCTGATCCCTCTGTA
GTTGATAAAGTCATTGAAGACACTCACATTATTAATGGGAAACAGGTGGA
AATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTCTAAGGATTTCAAGA
CGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCGGTGAATGAAGATGAA
TTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAAGAGCACCAAATCAT
GCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGGATTTATCACTTTTG
ACACGGAGCAAGCAGTTGATGACCTTTTGGCAAAGGGTAACAAGCTTGAG
TTGGCTGGAGCCCAGGTGGAGGTCAAGAAAGCAGAACCAAAGAAACCAAA
CCTACCACAACCATCTTATAGGCGATACAATAATCCTAAACCCGCATATG
GTAGTGGCTTTGGAGATGCTTACGGT
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