FC877999
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 4.174e-25 Identity = 68/195 (34.87%), Postives = 102/195 (52.31%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGD 767 K+FIGGL T+ HF K+G I D V+MKD KT + RGFGF+TY+ ++D H I+G+ VE KR +P+ + S + KK+FVGG+ +E+ +++F FG++ I+ D T + RGF FI FD VD ++ + + ++VKKA K+ Q P+ G GD Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTH-SIKNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGRGGQGD 218
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 5.451e-25 Identity = 66/200 (33.00%), Postives = 109/200 (54.50%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGS--GFGDAYG 776 K+FIGGL+ ET+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD ++ + + G EV+KA L + + + + G GFGD+ G Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKA------LSRQEMQEVQSSRSGRGGNFGFGDSRG 214
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 5.451e-25 Identity = 66/200 (33.00%), Postives = 109/200 (54.50%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGS--GFGDAYG 776 K+FIGGL+ ET+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD ++ + + G EV+KA L + + + + G GFGD+ G Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKA------LSRQEMQEVQSSRSGRGGNFGFGDSRG 214
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.451e-25 Identity = 66/200 (33.00%), Postives = 109/200 (54.50%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGS--GFGDAYG 776 K+FIGGL+ ET+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD ++ + + G EV+KA L + + + + G GFGD+ G Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKA------LSRQEMQEVQSSRSGRGGNFGFGDSRG 202
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 7.120e-25 Identity = 66/200 (33.00%), Postives = 108/200 (54.00%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGS--GFGDAYG 776 K+FIGGL+ ET+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD + + + G EV+KA L + + + + G GFGD+ G Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ-KYHTINGHNAEVRKA------LSRQEMQEVQSSRSGRGGNFGFGDSRG 214
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: HNDLA_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis GN=hnrpdl-A PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 7.120e-25 Identity = 63/170 (37.06%), Postives = 100/170 (58.82%), Query Frame = 3 Query: 189 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 695 GK+FIGGL+ +TS ++ ++GE+ D I D TG+ RGFGFV + D VDKV+E + H ++GK ++ KR K G + KK+FVGG+ E++ K +F FGE++ ++ D T+ RGF F+T+ E+ V LL + ++ + E+K A+PK+ Sbjct: 26 GKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLL-ESRFHQIGTGKCEIKAAQPKE 190
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.299e-25 Identity = 65/200 (32.50%), Postives = 109/200 (54.50%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGS--GFGDAYG 776 K+FIGGL+ +T+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD ++ + + G EV+KA L + + + + G GFGD+ G Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKA------LSRQEMQEVQSSRSGRGGNFGFGDSRG 202
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 2.706e-24 Identity = 70/199 (35.18%), Postives = 112/199 (56.28%), Query Frame = 3 Query: 114 DVHKSSDHHPEDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 695 D K+ + + S HT A+ K+FIGGL+ +T+ +F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFVGG+ E++ +++F FGEV+ ++ D+ T++ RGF FITF E+ V ++ K K G ++ E+K A K+ Sbjct: 69 DASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 261
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: ROA0_HUMAN (Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.027e-24 Identity = 64/172 (37.21%), Postives = 100/172 (58.14%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD-LLAKGNKLELAGAQVEVKKAEPKK 695 K+FIGGL +TS + HF +G +TD V++ + +T + R FGFVTY++ D + + H ++G VE+KR + + A K KK+FVGG+ V E + + F QFG V++ +I+ D + + RGFGF+ F A D + K + ++ G +VEVKKA PK+ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQ--GHRVEVKKAVPKE 177 HSP 2 Score: 67.3958 bits (163), Expect = 9.981e-11 Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 3 Query: 174 DGASPG------KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 422 D A PG K+F+GGL + + I+HF ++G + + I+ D+++G+ RGFGFV + + DK + H I G +VE+K+ +PK Sbjct: 87 DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: RO22_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.027e-24 Identity = 66/198 (33.33%), Postives = 109/198 (55.05%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776 K+FIGGL+ ET+ + ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + A KK+FVGGI E +++F ++G+++ +I+ D + + RGFGF+TF+ VD ++ + + G EV+KA K+ Q NN + GFGD+ G Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ-KYHTINGHNAEVRKALSKQE--MQDVQNTRNNRGGNF--GFGDSRG 202 HSP 2 Score: 69.707 bits (169), Expect = 2.011e-11 Identity = 38/110 (34.55%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 156 SQPHTGDG--------------ASPG------KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 422 ++PHT DG A PG K+F+GG+ +T ++F +YG+I + I+ D+++G+ RGFGFVT+ D VDK V++ H ING E+++ + K Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSK 178 The following BLAST results are available for this feature:
BLAST of FC877999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 136
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877999 ID=FC877999; Name=FC877999; organism=Citrus clementina; type=EST; length=776bpback to top |