FC878001

Overview
NameFC878001
Unique NameFC878001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5557 contig Ccv1_Contig5557:161..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A1_RABIT (Solute carrier family 15 member 1 OS=Oryctolagus cuniculus GN=SLC15A1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.814e-20
Identity = 72/242 (29.75%), Postives = 115/242 (47.52%), Query Frame = 3
Query:   96 FIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA--NSTILVVIYIQD------NLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSK-QRNPFARIGRVFVVAIKTR 794
            FI+  E  ERF+YYG+ + LI Y    +G     +    + +     L P+LGA +AD++LG+F+TIV  S++Y +G                D  ++ T  S   H   + V +  L L+A+G GG KPC  AFG DQF+    ++R   + FF+ +Y  I+ G+  ++ I  ++ +Q          + L FGIP             G+  Y+   K K Q N  +++ +    AIK R
Sbjct:   18 FIVVNEFCERFSYYGMRALLILYFRNFIGWDDNLSTVIYHTFVALCYLTPILGALIADAWLGKFKTIVWLSIVYTIG---QAVTSLSSVNELTDNNHDGTPDSLPVH---VAVCMIGLLLIALGTGGIKPCVSAFGGDQFEEGQEKQR---NRFFSIFYLAINAGSLLSTIITPMVRVQQCGIHVKQACYPLAFGIPAILMAVSLIVFIIGSGMYK---KFKPQGNILSKVVKCICFAIKNR 247          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A2_MOUSE (Solute carrier family 15 member 2 OS=Mus musculus GN=Slc15a2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.287e-20
Identity = 62/215 (28.84%), Postives = 105/215 (48.84%), Query Frame = 3
Query:   93 SFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN------WALGFGIPCXXXXXXXXXXXXGTKTYR 719
            +FI+  E  ERF+YYG+ + L  Y    L  +  T+ +  + +S      P+LGA +ADS+LG+F+TI+  SL+Y+LG                  ++              I+ +  L L+A+G GG KPC  AFG DQF+ ++ +   A++ +F+ +Y  I+ G+  +  +   ++ ++       +AL FGIP             G+K YR
Sbjct:   47 AFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVF---------------KSLGAIPILGGKMLHTILSLVGLSLIALGTGGIKPCVAAFGGDQFEEEHAE---ARTRYFSVFYLSINAGSLISTFITPMLRGDVKCFGEDCYALAFGIPGLLMVLALVVFAMGSKMYR 243          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A2_HUMAN (Solute carrier family 15 member 2 OS=Homo sapiens GN=SLC15A2 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.287e-20
Identity = 61/214 (28.50%), Postives = 105/214 (49.07%), Query Frame = 3
Query:   93 SFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN------WALGFGIPCXXXXXXXXXXXXGTKTY 716
            +FI+  E  ERF+YYG+ + LI Y    L  +  T+ +  + +S      P+LGA +ADS+LG+F+TI+  SL+Y+LG                  ++              ++ +  L L+A+G GG KPC  AFG DQF+ ++ +ER   + +F+ +Y  I+ G+  +  +   ++ ++       +AL FG+P             G+K Y
Sbjct:   47 AFIVVNEFCERFSYYGMKAVLILYFLYFLHWNEDTSTSIYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHV---------------IKSLGALPILGGQVVHTVLSLIGLSLIALGTGGIKPCVAAFGGDQFEEKHAEER---TRYFSVFYLSINAGSLISTFITPMLRGDVQCFGEDCYALAFGVPGLLMVIALVVFAMGSKIY 242          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A1_CANFA (Solute carrier family 15 member 1 OS=Canis familiaris GN=SLC15A1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.287e-20
Identity = 71/242 (29.34%), Postives = 112/242 (46.28%), Query Frame = 3
Query:   96 FIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV---------IYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTR 794
            FI+  E  ERF+YYG+ + LI Y    +G     + A  + +     L P+LGA +ADS+LG+F+TIV  S++Y +G                D   + T  + S H   + + +  L L+A+G GG KPC  AFG DQF+    ++R   + FF+ +Y  I+ G+  + +V          IY Q    + L FG+P             G+  Y+      Q N   ++ +    A+K R
Sbjct:   18 FIVVNEFCERFSYYGMRALLILYFRRFIGWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIG---QAVTAVSSINDLTDYNKDGTPDNLSVH---VALSMIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQR---NRFFSIFYLAINAGSLISTIVTPMLRVHECGIYSQ-KACYPLAFGVPAALMAVSLIVFVIGSGMYKKF--QPQGNVMGKVVKCIGFALKNR 247          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A2_RAT (Solute carrier family 15 member 2 OS=Rattus norvegicus GN=Slc15a2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.212e-20
Identity = 61/215 (28.37%), Postives = 105/215 (48.84%), Query Frame = 3
Query:   93 SFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN------WALGFGIPCXXXXXXXXXXXXGTKTYR 719
            +FI+  E  ERF+YYG+ + L  Y    L  +  T+ +  + +S      P+LGA +ADS+LG+F+TI+  SL+Y+LG                  ++              I+ +  L L+A+G GG KPC  AFG DQF+ ++ +   A++ +F+ +Y  I+ G+  +  +   ++ ++       +AL FG+P             G+K YR
Sbjct:   47 AFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVF---------------KSLGAIPILGGKMLHTILSLVGLSLIALGTGGIKPCVAAFGGDQFEEEHAE---ARTRYFSVFYLAINAGSLISTFITPMLRGDVKCFGQDCYALAFGVPGLLMVLALVVFAMGSKMYR 243          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A1_RAT (Solute carrier family 15 member 1 OS=Rattus norvegicus GN=Slc15a1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.212e-20
Identity = 68/241 (28.22%), Postives = 113/241 (46.89%), Query Frame = 3
Query:   96 FIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA--NSTILVVIYIQ------DNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTR 794
            FI+  E  ERF+YYG+ + L+ Y    LG     + A  + +     L P+LGA +ADS+LG+F+TIV  S++Y +G                D  +++   S +     + + +  L L+A+G GG KPC  AFG DQF+    ++R   + FF+ +Y  I+ G+  ++ I  ++ +Q          + L FG+P             G+  Y+      Q N   ++ +    AIK R
Sbjct:   18 FIVVNEFCERFSYYGMRALLVLYFRNFLGWDDDLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIG------QAVISVSSINDLTDHDHDGSPNNLPLHVALSMIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQR---NRFFSIFYLAINAGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALMAVALIVFVLGSGMYKKF--QPQGNIMGKVAKCIRFAIKNR 247          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A2_RABIT (Solute carrier family 15 member 2 OS=Oryctolagus cuniculus GN=SLC15A2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.186e-18
Identity = 62/221 (28.05%), Postives = 106/221 (47.96%), Query Frame = 3
Query:   93 SFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHF------QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN------WALGFGIPCXXXXXXXXXXXXGTKTYR 719
            +FI+  E  ERF+YYG+ + L  Y    L  +  T+ +  + +S      P+LGA +ADS+LG+F+TI+  SL+ +LG                     +  KS S            ++ +  L L+A+G GG KPC  AFG DQF+ ++ +ER   + +F+ +Y  I+ G+  +  +   ++ ++       +AL FG+P             G+K Y+
Sbjct:   47 AFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVNVLG---------------------HVIKSLSAFPILGGKVVHTVLSLVGLCLIALGTGGIKPCVAAFGGDQFEEKHAEER---TRYFSGFYLAINAGSLISTFITPMLRGDVQCFGEDCYALAFGVPGLLMVIALVVFAMGSKMYK 243          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A4_BOVIN (Solute carrier family 15 member 4 OS=Bos taurus GN=SLC15A4 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 69/251 (27.49%), Postives = 118/251 (47.01%), Query Frame = 3
Query:   72 SGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQ-LGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXX-DCQNNNTAKSCS-------PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRK 797
            +G   A + ++  E+ ER A+YG+++NL+ +L G   G   A A+ A+ ++ G   L+   G +LAD+ LGR R I+++  +Y+LG                         ++CS       P  +     + +L LV +G G  K     FGADQ   + P+  R    FFNW+Y+ I+ GA  ++  + YIQ N+++  G+ IP             G +T+ F  K    + F  + R+ V + + +K
Sbjct:   20 AGRRAACAAVLLTELLERAAFYGVTANLVLFLNGTAFGWEGAEASQALLLFMGLTYLVSPFGGWLADARLGRARAILLSLALYLLGMLAFPLLAAPATRSALCGAPGPTNVRNCSAPPCTDTPTRYCAPAVLSALALVGLGVGAVKANITPFGADQVKDRGPEATRR---FFNWFYWSINLGAIVSLGGIAYIQQNVSFVTGYAIPAVCIGVAFVVFLCG-QTF-FITKPPDGSAFTDMFRILVYSCRPQK 265          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A4_XENLA (Solute carrier family 15 member 4 OS=Xenopus laevis GN=slc15a4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 74/282 (26.24%), Postives = 122/282 (43.26%), Query Frame = 3
Query:   54 PIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQL-GESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXX----------DCQNNNTAKS----------CSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQ 836
            P   + SG   A + ++  E+ ER A+YGI+SNL+ +L GQ+ G     A+ A+ ++ G   L+     +LAD+ LGRF  I+ + ++Y+LG                          +C  +N +            C+P  F        L +V +G G  K     FGADQ   + P+  R    FFNW+Y+ I+ GA  ++  V Y+Q N+ + +G+ IP             G     F  K    + F  + ++      +RK T  +    Q++Q
Sbjct:   22 PAGSVFSGRGLACAAVLLSELLERVAFYGITSNLVLFLNGQIFGWEGTQASQALLLFMGITYLVSPFAGWLADALLGRFYVILGSMVLYLLGMLLFPMVSYSGTRTAFCGDIQWAQIENCSRSNASSDDTCPEPSRRYCAPALF------LGLIIVGLGVGSVKANITPFGADQVKDRGPEATRR---FFNWFYWSINLGAIISLGGVAYVQQNVEFLIGYIIPAVCIGVSFLVFLCGKTV--FVTKPADGSAFTDMVKILAYFCCSRKHTRENTRNIQNNQ 292          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: PEPT2_CAEEL (Peptide transporter family 2 OS=Caenorhabditis elegans GN=pept-2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.814e-17
Identity = 73/254 (28.74%), Postives = 114/254 (44.88%), Query Frame = 3
Query:   48 GRPIDRLNS--GG----WRAASF-IIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD------NLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRV 770
            G P+D   +  GG    W   +F I+G E+ ERF++YG+ + L  Y    L  S + +    + ++      PLLG+ LAD ++G+F TI   S+ Y  G                    ++ A S S HH   ++ +  L +V +G GG KPC  AFG DQF A      R  S FF+ +YF I+ G+  ++ +  Y +       +  + L FGIP             G+  Y+  +  K+   F  IG +
Sbjct:   13 GSPVDHQPTTWGGIIKKWPKQTFLIVGNELCERFSFYGMRAVLTLYFFNILNFSQSFSTVLFHAFTVICYSSPLLGSILADGYIGKFWTIFFISIFYACGQILLAF--------------SSIAPSGSSHH--PLLDLLGLLIVGLGTGGIKPCVSAFGGDQFPA---HYTRMISLFFSMFYFSINAGSLISMWLTPYFRSMSCFGHDSCYPLAFGIPAILMIVATLVFMAGSFWYK-KVPPKENIIFKVIGTI 246          
The following BLAST results are available for this feature:
BLAST of FC878001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
S15A1_RABIT4.814e-2029.75Solute carrier family 15 member 1 OS=Oryctolagus c... [more]
S15A2_MOUSE6.287e-2028.84Solute carrier family 15 member 2 OS=Mus musculus ... [more]
S15A2_HUMAN6.287e-2028.50Solute carrier family 15 member 2 OS=Homo sapiens ... [more]
S15A1_CANFA6.287e-2029.34Solute carrier family 15 member 1 OS=Canis familia... [more]
S15A2_RAT8.212e-2028.37Solute carrier family 15 member 2 OS=Rattus norveg... [more]
S15A1_RAT8.212e-2028.22Solute carrier family 15 member 1 OS=Rattus norveg... [more]
S15A2_RABIT1.186e-1828.05Solute carrier family 15 member 2 OS=Oryctolagus c... [more]
S15A4_BOVIN2.023e-1827.49Solute carrier family 15 member 4 OS=Bos taurus GN... [more]
S15A4_XENLA2.642e-1826.24Solute carrier family 15 member 4 OS=Xenopus laevi... [more]
PEPT2_CAEEL3.814e-1728.74Peptide transporter family 2 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA85CC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878001 ID=FC878001; Name=FC878001; organism=Citrus clementina; type=EST; length=864bp
CCGAAACTCTGCTCCCAGAAAACACAATTGGCTTTGTGGATCACCAGGGT
CGTCCGATCGACAGATTAAACTCCGGTGGCTGGAGAGCAGCATCTTTCAT
TATAGGTGTTGAAGTTGCAGAGAGGTTTGCATATTATGGGATATCATCAA
ATCTCATTACATATTTGACGGGACAGCTTGGTGAGTCGACGGCGACGGCA
GCTGCGGCGGTCAATGTCTGGTCGGGAACGGCGTCGCTGCTACCCCTTTT
AGGGGCATTTCTTGCTGATTCTTTTCTTGGCCGTTTTCGCACCATCGTTG
TTGCTTCTCTCATTTACATCTTGGGACTAAGCATGATGACTCTCTTGGCT
TTGATAACTTTGCTAAGCAGTTCAGATTGCCAAAATAACAACACTGCCAA
ATCCTGTTCTCCTCATCATTTCCAAATAATCGTATTTATCTTCTCCCTAT
ATCTAGTAGCCATTGGTCAAGGAGGGCACAAGCCTTGCACTCAGGCATTT
GGTGCTGATCAGTTTGATGCACAGAACCCTCAGGAACGCAGAGCCAAAAG
CTCTTTTTTCAATTGGTGGTATTTTGGTATATCCTTTGGCGCCAATTCAA
CAATTCTGGTTGTAATTTACATCCAAGATAACCTTAATTGGGCTCTTGGA
TTTGGGATTCCCTGTGCCTTTATGGTAGCTGCACTTGTTCTTTTCCTACT
TGGAACTAAGACCTACAGGTTTAGCATTAAAAGTAAACAGAGAAACCCAT
TTGCAAGAATTGGTCGAGTGTTTGTTGTTGCAATTAAGACCAGGAAAGCT
ACTCTGGCTAGTGAAGATGAAGCTCAAAGTTCTCAGCAGTTCGAGTTTCT
GAACAAGGCCTTGC
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