FC878008

Overview
NameFC878008
Unique NameFC878008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SYNAS (Tyrosyl-tRNA synthetase OS=Syntrophus aciditrophicus (strain SB) GN=tyrS PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.106e-42
Identity = 90/205 (43.90%), Postives = 128/205 (62.44%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            NV D    RG +E +T +N  ++  + E  L  Y GFDPTA SLH+G+L+ I+ L    R GH ++AL+GG TA +GDPSGK+  R  L  + +E N   +R+ F+    F     +++NN DW    +++ FL+ +GR   +  M+A ES K RL  E+GL+F EF+Y LLQ YDFLYLFQN    +Q+GG+DQWG + AG +L
Sbjct:    5 NVYDVFMERGFIEQVTDEN--AVRKALEAPLACYIGFDPTARSLHIGSLVPIMALIHLQRHGHTSIALVGGGTALIGDPSGKTEMRQILTREKIELNATCMRRQFARYLSFEDKKAMMINNADWLTKLNYISFLRDIGRHFSVNKMLAAESYKMRL--EKGLNFIEFNYMLLQAYDFLYLFQNHNCVMQMGGNDQWGNMLAGVDL 205          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SODGM (Tyrosyl-tRNA synthetase OS=Sodalis glossinidius (strain morsitans) GN=tyrS PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.106e-42
Identity = 93/210 (44.29%), Postives = 134/210 (63.81%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRS--LASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T +   +  LA+     + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I++  S       G ++ V  NNYDW+   + L FL  +G+   +  MI KE+VK+RL   + G+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIQQLQERGLIAQVTDEKALAERLAAG---PIALYCGFDPTADSLHLGHLVPLLCLKRFQLAGHRPVALVGGATGLIGDPSFKATERKLNTAETVQEWVEKIKRQVSPFLDFDCGDNSAVAANNYDWFGSMNVLTFLLDIGKHFSVNQMINKEAVKQRLNRDDSGISFTEFSYNLLQGYDFACLNKQYGVALQIGGSDQWGNITSGIDL 211          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_NEIMF (Tyrosyl-tRNA synthetase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tyrS PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.106e-42
Identity = 91/208 (43.75%), Postives = 135/208 (64.90%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSL-ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK---TFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            +V+  L+ RGL+   T  ++ +L A  NE+ + +YCGFDPTA+SLH+G+LL ++ L  F + GH  +AL+GGAT  +GDPS K+ ER     +T+   +  IR     F +  G +  ++ NN DW+   + LDFL+ +G+   +  M+ KESVK+R++ +  G+SFTEF+Y LLQGYDF  L +  G  ++IGGSDQWG ITAG +L
Sbjct:    2 SVIQDLQSRGLIAQTT--DIEALDALLNEQKISLYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIRSQLTPFLSFEGGNAAIMANNADWFGKMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDL 207          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_NEIMB (Tyrosyl-tRNA synthetase OS=Neisseria meningitidis serogroup B GN=tyrS PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.106e-42
Identity = 91/208 (43.75%), Postives = 135/208 (64.90%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSL-ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK---TFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            +V+  L+ RGL+   T  ++ +L A  NE+ + +YCGFDPTA+SLH+G+LL ++ L  F + GH  +AL+GGAT  +GDPS K+ ER     +T+   +  IR     F +  G +  ++ NN DW+   + LDFL+ +G+   +  M+ KESVK+R++ +  G+SFTEF+Y LLQGYDF  L +  G  ++IGGSDQWG ITAG +L
Sbjct:    2 SVIQDLQSRGLIAQTT--DIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIRNQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDL 207          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_DESAA (Tyrosyl-tRNA synthetase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=tyrS PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.106e-42
Identity = 93/205 (45.37%), Postives = 124/205 (60.49%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFG-SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            NV+ TL+ RG +E  T D  L  L S  +  +  Y GFDPTA SLH+G+L+ I+ L+   R GH+ +AL+GG T  VGDPSGK+  R  L ++ +  N  GIR   +         V  NN +W     +++FL+  GR   +  MI  ES + RLESE+GLSF EF+Y LLQ YDFL+LF   G  +Q+GGSDQWG I AG +L
Sbjct:    4 NVLQTLKERGFIEQTTHDQELEDLLSGEQ--VSCYIGFDPTASSLHVGSLVPIMSLAHMQRAGHRPIALVGGGTGLVGDPSGKTEMRKLLTLEDVNNNAEGIRAQLARFIDFDKGAVQENNANWLVGLKYIEFLRDFGRHFSVNRMIKAESYRMRLESEEGLSFIEFNYMLLQAYDFLHLFNEYGCQLQMGGSDQWGNIVAGIDL 206          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_DECAR (Tyrosyl-tRNA synthetase OS=Dechloromonas aromatica (strain RCB) GN=tyrS PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.106e-42
Identity = 92/206 (44.66%), Postives = 131/206 (63.59%), Query Frame = 1
Query:  220 VVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEK---NILGIRKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++  L  RGL+  IT D         E+++ +YCGFDPTA+SLHLG+L+ +++L  F   GH+ +AL+GGAT  +GDPS K+ ER     D +      I G  + F    G++  ++ NNYDW+   + L+F++ +G+   +  MI KESV++RL  E QG+S+TEFSY LLQGYDF  L +  G  +QIGGSDQWG I AGT+L
Sbjct:    6 LIQDLHDRGLIAQIT-DAAALDKLLTEESVTLYCGFDPTADSLHLGHLVPVLILKRFQEAGHKPIALVGGATGMIGDPSFKATERKLNTPDVIASWVGKIRGQVEPFLKFDGANAAIMANNYDWFGGMNCLEFMRDIGKHFSVNAMIKKESVQQRLTREDQGISYTEFSYSLLQGYDFAELNKRYGCVLQIGGSDQWGNIVAGTDL 210          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY1_BACHK (Tyrosyl-tRNA synthetase 1 OS=Bacillus thuringiensis subsp. konkukian GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.106e-42
Identity = 92/207 (44.44%), Postives = 130/207 (62.80%), Query Frame = 1
Query:  220 VVDTLERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNV----VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I+   S      NV     + NNYDW  +   + FL+ +G+   +  M+AK++V  RLE+  G+SFTEFSY +LQ YDFL L+Q+    +QIGGSDQWG ITAG EL
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVENPATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLET--GISFTEFSYMILQSYDFLNLYQHHNCRLQIGGSDQWGNITAGLEL 205          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY1_BACCZ (Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (strain ZK / E33L) GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.106e-42
Identity = 92/207 (44.44%), Postives = 130/207 (62.80%), Query Frame = 1
Query:  220 VVDTLERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNV----VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I+   S      NV     + NNYDW  +   + FL+ +G+   +  M+AK++V  RLE+  G+SFTEFSY +LQ YDFL L+Q+    +QIGGSDQWG ITAG EL
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVENPATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLET--GISFTEFSYMILQSYDFLNLYQHHNCRLQIGGSDQWGNITAGLEL 205          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY1_BACC1 (Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (strain ATCC 10987) GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.106e-42
Identity = 92/207 (44.44%), Postives = 130/207 (62.80%), Query Frame = 1
Query:  220 VVDTLERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNV----VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I+   S      NV     + NNYDW  +   + FL+ +G+   +  M+AK++V  RLE+  G+SFTEFSY +LQ YDFL L+Q+    +QIGGSDQWG ITAG EL
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVDNPATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLET--GISFTEFSYMILQSYDFLNLYQHHNCRLQIGGSDQWGNITAGLEL 205          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY1_BACAN (Tyrosyl-tRNA synthetase 1 OS=Bacillus anthracis GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.106e-42
Identity = 92/207 (44.44%), Postives = 130/207 (62.80%), Query Frame = 1
Query:  220 VVDTLERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNV----VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I+   S      NV     + NNYDW  +   + FL+ +G+   +  M+AK++V  RLE+  G+SFTEFSY +LQ YDFL L+Q+    +QIGGSDQWG ITAG EL
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVENPATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLET--GISFTEFSYMILQSYDFLNLYQHHNCRLQIGGSDQWGNITAGLEL 205          
The following BLAST results are available for this feature:
BLAST of FC878008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_SYNAS1.106e-4243.90Tyrosyl-tRNA synthetase OS=Syntrophus aciditrophic... [more]
SYY_SODGM1.106e-4244.29Tyrosyl-tRNA synthetase OS=Sodalis glossinidius (s... [more]
SYY_NEIMF1.106e-4243.75Tyrosyl-tRNA synthetase OS=Neisseria meningitidis ... [more]
SYY_NEIMB1.106e-4243.75Tyrosyl-tRNA synthetase OS=Neisseria meningitidis ... [more]
SYY_DESAA1.106e-4245.37Tyrosyl-tRNA synthetase OS=Desulfatibacillum alken... [more]
SYY_DECAR1.106e-4244.66Tyrosyl-tRNA synthetase OS=Dechloromonas aromatica... [more]
SYY1_BACHK1.106e-4244.44Tyrosyl-tRNA synthetase 1 OS=Bacillus thuringiensi... [more]
SYY1_BACCZ1.106e-4244.44Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (stra... [more]
SYY1_BACC11.106e-4244.44Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (stra... [more]
SYY1_BACAN1.106e-4244.44Tyrosyl-tRNA synthetase 1 OS=Bacillus anthracis GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE04RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878008 ID=FC878008; Name=FC878008; organism=Citrus clementina; type=EST; length=825bp
CAAACGCAAATGGCAGCCGCAGCCGCTGCCGCTGCGTCGAGAACTCTCCT
CTGCTCCCACCAAAAACTCATAACCTCATCCATTTACAGCACCACCACCT
CAAAAATCACCCACCCATTTCTTCACCGCATTAAAAACTCTGCTTTCTTC
TCTTCGATCAGCTGCGTTCAACAACTCCAATCCGACCCACAGACACAAAC
CCACGGCCGTCACCCGAATGTCGTCGACACTCTCGAGAGAAGAGGCTTGC
TTGAATCTATCACCAGTGACAATCTCCGCTCACTCGCTTCATCCAATGAG
AAAACCCTCAAAGTCTACTGCGGGTTTGACCCAACTGCCGAGTCCTTACA
CTTGGGTAACCTCTTGGGTATCATTGTTCTGTCTTGGTTCCTCCGTTGCG
GCCACCAAGCTGTCGCCTTGATCGGTGGCGCCACCGCTCGTGTTGGTGAC
CCATCTGGGAAATCAATAGAAAGGCCTGAACTCGACATTGATACGTTAGA
AAAGAACATTCTTGGAATTCGTAAGACTTTTTCAACCATTTTTGGTTCTA
GTAATGTTGTTATTTTGAATAATTATGATTGGTGGAAAGATTTTAGCTTC
CTGGATTTTCTTAAACAAGTGGGTCGATTTGCGAGAATTGGGACTATGAT
TGCTAAGGAGAGTGTGAAGAAGAGGTTGGAATCTGAGCAAGGATTGAGCT
TTACTGAGTTTAGTTATCAGTTGTTGCAGGGATATGATTTTCTTTACTTG
TTTCAAAATAAGGGTGTTAATGTTCAGATTGGGGGGAGTGATCAGTGGGG
GTACATTACTGCTGGGACTGAGCTT
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