FC878008

Overview
NameFC878008
Unique NameFC878008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig593 contig Ccv1_Contig593:19..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SHISS (Tyrosyl-tRNA synthetase OS=Shigella sonnei (strain Ss046) GN=tyrS PE=3 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 93/208 (44.71%), Postives = 137/208 (65.87%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDL 211
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SHIB3 (Tyrosyl-tRNA synthetase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 93/208 (44.71%), Postives = 137/208 (65.87%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDL 211
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALTY (Tyrosyl-tRNA synthetase OS=Salmonella typhimurium GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALTI (Tyrosyl-tRNA synthetase OS=Salmonella typhi GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALSV (Tyrosyl-tRNA synthetase OS=Salmonella schwarzengrund (strain CVM19633) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALPK (Tyrosyl-tRNA synthetase OS=Salmonella paratyphi A (strain AKU_12601) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALPC (Tyrosyl-tRNA synthetase OS=Salmonella paratyphi C (strain RKS4594) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    9 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 215
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALPB (Tyrosyl-tRNA synthetase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALPA (Tyrosyl-tRNA synthetase OS=Salmonella paratyphi A GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALNS (Tyrosyl-tRNA synthetase OS=Salmonella newport (strain SL254) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211
The following BLAST results are available for this feature:
BLAST of FC878008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_SHISS4.492e-4444.71Tyrosyl-tRNA synthetase OS=Shigella sonnei (strain... [more]
SYY_SHIB34.492e-4444.71Tyrosyl-tRNA synthetase OS=Shigella boydii serotyp... [more]
SYY_SALTY4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella typhimurium ... [more]
SYY_SALTI4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella typhi GN=tyr... [more]
SYY_SALSV4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella schwarzengru... [more]
SYY_SALPK4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella paratyphi A ... [more]
SYY_SALPC4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella paratyphi C ... [more]
SYY_SALPB4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella paratyphi B ... [more]
SYY_SALPA4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella paratyphi A ... [more]
SYY_SALNS4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella newport (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE04RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878008 ID=FC878008; Name=FC878008; organism=Citrus clementina; type=EST; length=825bp
CAAACGCAAATGGCAGCCGCAGCCGCTGCCGCTGCGTCGAGAACTCTCCT
CTGCTCCCACCAAAAACTCATAACCTCATCCATTTACAGCACCACCACCT
CAAAAATCACCCACCCATTTCTTCACCGCATTAAAAACTCTGCTTTCTTC
TCTTCGATCAGCTGCGTTCAACAACTCCAATCCGACCCACAGACACAAAC
CCACGGCCGTCACCCGAATGTCGTCGACACTCTCGAGAGAAGAGGCTTGC
TTGAATCTATCACCAGTGACAATCTCCGCTCACTCGCTTCATCCAATGAG
AAAACCCTCAAAGTCTACTGCGGGTTTGACCCAACTGCCGAGTCCTTACA
CTTGGGTAACCTCTTGGGTATCATTGTTCTGTCTTGGTTCCTCCGTTGCG
GCCACCAAGCTGTCGCCTTGATCGGTGGCGCCACCGCTCGTGTTGGTGAC
CCATCTGGGAAATCAATAGAAAGGCCTGAACTCGACATTGATACGTTAGA
AAAGAACATTCTTGGAATTCGTAAGACTTTTTCAACCATTTTTGGTTCTA
GTAATGTTGTTATTTTGAATAATTATGATTGGTGGAAAGATTTTAGCTTC
CTGGATTTTCTTAAACAAGTGGGTCGATTTGCGAGAATTGGGACTATGAT
TGCTAAGGAGAGTGTGAAGAAGAGGTTGGAATCTGAGCAAGGATTGAGCT
TTACTGAGTTTAGTTATCAGTTGTTGCAGGGATATGATTTTCTTTACTTG
TTTCAAAATAAGGGTGTTAATGTTCAGATTGGGGGGAGTGATCAGTGGGG
GTACATTACTGCTGGGACTGAGCTT
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