FC878008

Overview
NameFC878008
Unique NameFC878008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALHS (Tyrosyl-tRNA synthetase OS=Salmonella heidelberg (strain SL476) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALG2 (Tyrosyl-tRNA synthetase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALDC (Tyrosyl-tRNA synthetase OS=Salmonella dublin (strain CT_02021853) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALCH (Tyrosyl-tRNA synthetase OS=Salmonella choleraesuis GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALAR (Tyrosyl-tRNA synthetase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    9 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 215          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_SALA4 (Tyrosyl-tRNA synthetase OS=Salmonella agona (strain SL483) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  IRK  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF  L +  GV +QIGGSDQWG IT+G +L
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDL 211          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_LISMO (Tyrosyl-tRNA synthetase OS=Listeria monocytogenes GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 91/207 (43.96%), Postives = 131/207 (63.29%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++D LE RG +   T +  LR      EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + KN+  +R     IF   G+S   ++NNYDW KD S LDFL+  G+   + TM++K+ V  RL  E G+SFTEF+YQ+LQ  DF +L++     +QIGGSDQWG ITAG +L
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWVE--EKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRL--EVGISFTEFAYQILQAMDFNHLYEFNDCRLQIGGSDQWGNITAGLDL 204          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_LISMH (Tyrosyl-tRNA synthetase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 91/207 (43.96%), Postives = 131/207 (63.29%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++D LE RG +   T +  LR     +EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + KN+  +R     IF   G S   ++NNYDW KD S LDFL+  G+   + TM++K+ V  RL  E G+SFTEF+YQ+LQ  DF +L++     +QIGGSDQWG ITAG +L
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWV--DEKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGDSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRL--EVGISFTEFAYQILQAMDFNHLYEFNDCRLQIGGSDQWGNITAGLDL 204          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_LISMF (Tyrosyl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 91/207 (43.96%), Postives = 131/207 (63.29%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++D LE RG +   T +  LR      EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + KN+  +R     IF   G+S   ++NNYDW KD S LDFL+  G+   + TM++K+ V  RL  E G+SFTEF+YQ+LQ  DF +L++     +QIGGSDQWG ITAG +L
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWVE--EKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRL--EVGISFTEFAYQILQAMDFNHLYEFNDCRLQIGGSDQWGNITAGLDL 204          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_LISMC (Tyrosyl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=tyrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.492e-44
Identity = 91/207 (43.96%), Postives = 131/207 (63.29%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N++D LE RG +   T +  LR      EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + KN+  +R     IF   G+S   ++NNYDW KD S LDFL+  G+   + TM++K+ V  RL  E G+SFTEF+YQ+LQ  DF +L++     +QIGGSDQWG ITAG +L
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWVE--EKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRL--EVGISFTEFAYQILQAMDFNHLYEFNDCRLQIGGSDQWGNITAGLDL 204          
The following BLAST results are available for this feature:
BLAST of FC878008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_SALHS4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella heidelberg (... [more]
SYY_SALG24.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella gallinarum (... [more]
SYY_SALDC4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella dublin (stra... [more]
SYY_SALCH4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella choleraesuis... [more]
SYY_SALAR4.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella arizonae (st... [more]
SYY_SALA44.492e-4444.23Tyrosyl-tRNA synthetase OS=Salmonella agona (strai... [more]
SYY_LISMO4.492e-4443.96Tyrosyl-tRNA synthetase OS=Listeria monocytogenes ... [more]
SYY_LISMH4.492e-4443.96Tyrosyl-tRNA synthetase OS=Listeria monocytogenes ... [more]
SYY_LISMF4.492e-4443.96Tyrosyl-tRNA synthetase OS=Listeria monocytogenes ... [more]
SYY_LISMC4.492e-4443.96Tyrosyl-tRNA synthetase OS=Listeria monocytogenes ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE04RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878008 ID=FC878008; Name=FC878008; organism=Citrus clementina; type=EST; length=825bp
CAAACGCAAATGGCAGCCGCAGCCGCTGCCGCTGCGTCGAGAACTCTCCT
CTGCTCCCACCAAAAACTCATAACCTCATCCATTTACAGCACCACCACCT
CAAAAATCACCCACCCATTTCTTCACCGCATTAAAAACTCTGCTTTCTTC
TCTTCGATCAGCTGCGTTCAACAACTCCAATCCGACCCACAGACACAAAC
CCACGGCCGTCACCCGAATGTCGTCGACACTCTCGAGAGAAGAGGCTTGC
TTGAATCTATCACCAGTGACAATCTCCGCTCACTCGCTTCATCCAATGAG
AAAACCCTCAAAGTCTACTGCGGGTTTGACCCAACTGCCGAGTCCTTACA
CTTGGGTAACCTCTTGGGTATCATTGTTCTGTCTTGGTTCCTCCGTTGCG
GCCACCAAGCTGTCGCCTTGATCGGTGGCGCCACCGCTCGTGTTGGTGAC
CCATCTGGGAAATCAATAGAAAGGCCTGAACTCGACATTGATACGTTAGA
AAAGAACATTCTTGGAATTCGTAAGACTTTTTCAACCATTTTTGGTTCTA
GTAATGTTGTTATTTTGAATAATTATGATTGGTGGAAAGATTTTAGCTTC
CTGGATTTTCTTAAACAAGTGGGTCGATTTGCGAGAATTGGGACTATGAT
TGCTAAGGAGAGTGTGAAGAAGAGGTTGGAATCTGAGCAAGGATTGAGCT
TTACTGAGTTTAGTTATCAGTTGTTGCAGGGATATGATTTTCTTTACTTG
TTTCAAAATAAGGGTGTTAATGTTCAGATTGGGGGGAGTGATCAGTGGGG
GTACATTACTGCTGGGACTGAGCTT
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