FC878008

Overview
NameFC878008
Unique NameFC878008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig593 contig Ccv1_Contig593:19..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_STRR6 (Tyrosyl-tRNA synthetase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tyrS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 92/207 (44.44%), Postives = 132/207 (63.77%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++ D L+ RGL+   T +     A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     DT++  +  I+   S       G +  V++NNYDW+   SF+DFL+ +G++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF  L Q+  V +QIGGSDQWG +TAGTEL
Sbjct:    2 HIFDELKERGLIFQTTDEEALRKALE-EGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVKSIQGQLSRFLDFENGENKAVMVNNYDWFGSISFIDFLRDIGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDFFVLNQDHNVTLQIGGSDQWGNMTAGTEL 205
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_STRPS (Tyrosyl-tRNA synthetase OS=Streptococcus pneumoniae (strain CGSP14) GN=tyrS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 92/207 (44.44%), Postives = 132/207 (63.77%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++ D L+ RGL+   T +     A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     DT++  +  I+   S       G +  V++NNYDW+   SF+DFL+ +G++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF  L Q+  V +QIGGSDQWG +TAGTEL
Sbjct:    2 HIFDELKERGLIFQTTDEEALRKALE-EGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVKSIQGQLSRFLDFENGENKAVMVNNYDWFGSISFIDFLRDIGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDFFVLNQDHNVTLQIGGSDQWGNMTAGTEL 205
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_STRPN (Tyrosyl-tRNA synthetase OS=Streptococcus pneumoniae GN=tyrS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 92/207 (44.44%), Postives = 132/207 (63.77%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++ D L+ RGL+   T +     A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     DT++  +  I+   S       G +  V++NNYDW+   SF+DFL+ +G++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF  L Q+  V +QIGGSDQWG +TAGTEL
Sbjct:    2 HIFDELKERGLIFQTTDEEALRKALE-EGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVKSIQGQLSRFLDFENGENKAVMVNNYDWFGSISFIDFLRDIGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDFFVLNQDHNVTLQIGGSDQWGNMTAGTEL 205
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_STRPJ (Tyrosyl-tRNA synthetase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 92/207 (44.44%), Postives = 132/207 (63.77%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++ D L+ RGL+   T +     A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     DT++  +  I+   S       G +  V++NNYDW+   SF+DFL+ +G++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF  L Q+  V +QIGGSDQWG +TAGTEL
Sbjct:    2 HIFDELKERGLIFQTTDEEALRKALE-EGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVKSIQGQLSRFLDFENGENKAVMVNNYDWFGSISFIDFLRDIGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDFFVLNQDHNVTLQIGGSDQWGNMTAGTEL 205
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_STRPI (Tyrosyl-tRNA synthetase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=tyrS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 92/207 (44.44%), Postives = 132/207 (63.77%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++ D L+ RGL+   T +     A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     DT++  +  I+   S       G +  V++NNYDW+   SF+DFL+ +G++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF  L Q+  V +QIGGSDQWG +TAGTEL
Sbjct:    2 HIFDELKERGLIFQTTDEEALRKALE-EGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVKSIQGQLSRFLDFENGENKAVMVNNYDWFGSISFIDFLRDIGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDFFVLNQDHNVTLQIGGSDQWGNMTAGTEL 205
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_STRP4 (Tyrosyl-tRNA synthetase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=tyrS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 92/207 (44.44%), Postives = 132/207 (63.77%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++ D L+ RGL+   T +     A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     DT++  +  I+   S       G +  V++NNYDW+   SF+DFL+ +G++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF  L Q+  V +QIGGSDQWG +TAGTEL
Sbjct:    2 HIFDELKERGLIFQTTDEEALRKALE-EGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVKSIQGQLSRFLDFENGENKAVMVNNYDWFGSISFIDFLRDIGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDFFVLNQDHNVTLQIGGSDQWGNMTAGTEL 205
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_STRP2 (Tyrosyl-tRNA synthetase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tyrS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 92/207 (44.44%), Postives = 132/207 (63.77%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++ D L+ RGL+   T +     A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     DT++  +  I+   S       G +  V++NNYDW+   SF+DFL+ +G++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF  L Q+  V +QIGGSDQWG +TAGTEL
Sbjct:    2 HIFDELKERGLIFQTTDEEALRKALE-EGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVKSIQGQLSRFLDFENGENKAVMVNNYDWFGSISFIDFLRDIGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDFFVLNQDHNVTLQIGGSDQWGNMTAGTEL 205
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_STRA5 (Tyrosyl-tRNA synthetase OS=Streptococcus agalactiae serotype V GN=tyrS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 94/207 (45.41%), Postives = 133/207 (64.25%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N+ D L+ RGL+   T ++    A   E ++  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K +ER      T+      IR   S       G +  V++NNYDW+ + SF+DFL+ VG++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF  L +N  V +QIGGSDQWG +TAGTEL
Sbjct:    2 NIFDELKERGLVFQTTDEDALRKALE-EGSVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDVERSLQTKKTVVSWGNKIRGQLSNFLEFETGDNKAVLVNNYDWFSNISFIDFLRDVGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDFYELNKNYNVTLQIGGSDQWGNMTAGTEL 205
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_STRA1 (Tyrosyl-tRNA synthetase OS=Streptococcus agalactiae serotype Ia GN=tyrS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 94/207 (45.41%), Postives = 133/207 (64.25%), Query Frame = 1 
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N+ D L+ RGL+   T ++    A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K +ER     +T+      IR   S       G +  V++NNYDW+ + SF+DFL+ VG++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF  L +N  V +QIGGSDQWG +TAGTEL
Sbjct:    2 NIFDELKERGLVFQTTDEDALRKALE-EGFVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDVERSLQTKETVVSWGNKIRGQLSNFLEFETGDNKAVLVNNYDWFSNISFIDFLRDVGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDFYELNKNYNVTLQIGGSDQWGNMTAGTEL 205
[Close]
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_RHOS4 (Tyrosyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=tyrS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 91/212 (42.92%), Postives = 137/212 (64.62%), Query Frame = 1 
Query:  211 HP--NVVDTLERRGLLESITSDNLRSLASSNEK-TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            HP  + +  ++ RG L   T  ++++L  +  K  +  Y G+D TA SLH+G+LL I++L W  + GH+ + L+GG T +VGDPS +S ERP L  D +++NI G+RK F+       G+++ ++LNN +W    ++LDFL+ +GR   +  M++ ESVK RL+ EQ LSF EF+Y +LQ YDFL LF+  G  +Q+GGSDQWG I  G +L
Sbjct:    4 HPKSDFLRVMQERGYLADCT--DMQALDEALSKGVVPAYIGYDATAASLHVGHLLNIMMLRWLQKTGHKPITLMGGGTTKVGDPSFRSEERPLLTPDRIDENIEGMRKVFARYLSYGEGATDALMLNNAEWLDQLNYLDFLRDIGRHFSVNRMLSFESVKSRLDREQSLSFLEFNYMILQAYDFLELFRRTGCRLQMGGSDQWGNIVNGIDL 213
The following BLAST results are available for this feature:
BLAST of FC878008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_STRR67.662e-4444.44Tyrosyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYY_STRPS7.662e-4444.44Tyrosyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYY_STRPN7.662e-4444.44Tyrosyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYY_STRPJ7.662e-4444.44Tyrosyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYY_STRPI7.662e-4444.44Tyrosyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYY_STRP47.662e-4444.44Tyrosyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYY_STRP27.662e-4444.44Tyrosyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYY_STRA57.662e-4445.41Tyrosyl-tRNA synthetase OS=Streptococcus agalactia... [more]
SYY_STRA17.662e-4445.41Tyrosyl-tRNA synthetase OS=Streptococcus agalactia... [more]
SYY_RHOS47.662e-4442.92Tyrosyl-tRNA synthetase OS=Rhodobacter sphaeroides... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE04RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878008 ID=FC878008; Name=FC878008; organism=Citrus clementina; type=EST; length=825bp
CAAACGCAAATGGCAGCCGCAGCCGCTGCCGCTGCGTCGAGAACTCTCCT
CTGCTCCCACCAAAAACTCATAACCTCATCCATTTACAGCACCACCACCT
CAAAAATCACCCACCCATTTCTTCACCGCATTAAAAACTCTGCTTTCTTC
TCTTCGATCAGCTGCGTTCAACAACTCCAATCCGACCCACAGACACAAAC
CCACGGCCGTCACCCGAATGTCGTCGACACTCTCGAGAGAAGAGGCTTGC
TTGAATCTATCACCAGTGACAATCTCCGCTCACTCGCTTCATCCAATGAG
AAAACCCTCAAAGTCTACTGCGGGTTTGACCCAACTGCCGAGTCCTTACA
CTTGGGTAACCTCTTGGGTATCATTGTTCTGTCTTGGTTCCTCCGTTGCG
GCCACCAAGCTGTCGCCTTGATCGGTGGCGCCACCGCTCGTGTTGGTGAC
CCATCTGGGAAATCAATAGAAAGGCCTGAACTCGACATTGATACGTTAGA
AAAGAACATTCTTGGAATTCGTAAGACTTTTTCAACCATTTTTGGTTCTA
GTAATGTTGTTATTTTGAATAATTATGATTGGTGGAAAGATTTTAGCTTC
CTGGATTTTCTTAAACAAGTGGGTCGATTTGCGAGAATTGGGACTATGAT
TGCTAAGGAGAGTGTGAAGAAGAGGTTGGAATCTGAGCAAGGATTGAGCT
TTACTGAGTTTAGTTATCAGTTGTTGCAGGGATATGATTTTCTTTACTTG
TTTCAAAATAAGGGTGTTAATGTTCAGATTGGGGGGAGTGATCAGTGGGG
GTACATTACTGCTGGGACTGAGCTT
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