FC878010

Overview
NameFC878010
Unique NameFC878010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length945
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10482 contig Ccv1_Contig10482:1..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878010 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.229e-12
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   72 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 362
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +S ++ SGS D  VR+WD  T +C+ +   +  P++++ F+ +G L+  +S
Sbjct:   94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190          
BLAST of FC878010 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 3
Query:   72 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 362
            A+S D + + S   D T+KI D ++G  +K L GH+   + V F+P +S ++ SGS D  VR+WD NT EC      +  P+  + F+ +G L+   S
Sbjct:   95 AWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGS 191          
BLAST of FC878010 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 39/118 (33.05%), Postives = 66/118 (55.93%), Query Frame = 3
Query:   54 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEG-ELLAVASGHKLYIWPYNNKE 401
            R   A   S DGR +AS   D T+K+ D  TG  + VL GHRR  W   F+P  S  LASGS D  +R+W+ +T +C+ + + +   I  + + ++G ++++ A+   + +W  ++ E
Sbjct:  466 RDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPF-SRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGE 582          
BLAST of FC878010 vs. ExPASy Swiss-Prot
Match: PF20_CHLRE (Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.686e-11
Identity = 41/105 (39.05%), Postives = 55/105 (52.38%), Query Frame = 3
Query:   75 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC-IGSCDFYRPIASIAFHAEGELLAVASGHK-LYIW 383
            F P G  LAS  GD  VKI D +   C+   + H++  W VRFH L  E++ASGSLDH VRLWD    +C +        +  +A+      LA AS  K + +W
Sbjct:  376 FHPAGTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQAIWSVRFHHL-GEVVASGSLDHTVRLWDLPAGKCRMALRGHVDSVNDLAWQPFSSSLATASSDKTVSVW 479          
BLAST of FC878010 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   72 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 362
            A+S D R L S   D T+K+ +  TG  LK L GH    +   F+P +S ++ SGS D  VR+WD  T +C+ +   +  P++++ F+ +G L+  +S
Sbjct:  121 AWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 217          
BLAST of FC878010 vs. ExPASy Swiss-Prot
Match: PKWA_THECU (Probable serine/threonine-protein kinase pkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 3
Query:   39 LVPPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNCLKVLSGHRRTPWV--VRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY-RPIASIAFHAEGELLAVAS-GHKLYIWP 386
            L  P  + ++ AFSPDG  L   HG D TV + D  +G  L    GH  T WV  V F P    +LASGS D  +RLWD    E   + + +  P+ S+AFH EG  LA AS    + IWP
Sbjct:  623 LQAPAENVVSLAFSPDGSML--VHGSDSTVHLWDVASGEALHTFEGH--TDWVRAVAFSP-DGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTIRIWP 738          
BLAST of FC878010 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.993e-11
Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 3
Query:   72 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 362
            A+S D   L S   D T+K+ D ++G CLK L GH    +   F+P  S ++ SGS D  V++W+  T +C+ +   +  PI+++ FH  G L+   S
Sbjct:   88 AWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNP-PSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGS 184          
The following BLAST results are available for this feature:
BLAST of FC878010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
WDR5_BOVIN7.229e-1235.71WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
WDR5_DICDI1.611e-1135.71WD repeat-containing protein 5 homolog OS=Dictyost... [more]
UTP13_SCHPO1.611e-1133.05Probable U3 small nucleolar RNA-associated protein... [more]
PF20_CHLRE4.686e-1139.05Flagellar WD repeat-containing protein Pf20 OS=Chl... [more]
WDS_DROME6.120e-1134.69Protein will die slowly OS=Drosophila melanogaster... [more]
PKWA_THECU6.120e-1141.32Probable serine/threonine-protein kinase pkwA OS=T... [more]
WDR5B_RAT7.993e-1134.69WD repeat-containing protein 5B OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878010 ID=FC878010; Name=FC878010; organism=Citrus clementina; type=EST; length=945bp
CAGAATCATTACGGCATTTATCAGCAAAGTATTGTCCTTTGGTGCCTCCT
CCAAGATCCACTATTGCGGCAGCATTTAGTCCTGATGGAAGAACACTTGC
ATCAACACATGGTGACCACACTGTAAAGATAATCGATTGCCAAACTGGAA
ACTGCTTGAAGGTGTTGAGTGGACATCGGAGGACACCATGGGTGGTTAGG
TTTCACCCATTACGTTCAGAAATTCTTGCAAGTGGGAGCTTGGATCATGA
AGTTCGCTTGTGGGATGCAAACACATCGGAGTGTATAGGATCATGTGATT
TCTATCGTCCCATTGCTTCCATTGCTTTCCATGCTGAAGGAGAACTCCTT
GCTGTTGCATCGGGTCACAAGTTGTACATATGGCCCTACAACAACAAAGA
GGAAGCTTCCTCGCCAATAATTGTGCTGAAGACTAGGCGCTCACTTCGAG
CTGTACATTTTCACCCTCATGCTGCTCCATTTGTTTTGACTGCTGAGGTC
AATGATCTTGACTCTTCAGATTCGTCAATGACACGAGCAACGTCTCCTGG
TTACTTGCGATATCCTCCCCCAGCTGTCTTTGTGGCAAATGCTCAGTCCG
GTGACCATGTTAGCTTGGCTGCTGAACTTCCTCTTATGTCCTCCTTGCCT
TTCTTGATTGTGCCTTCAGTTTCAATAGATGATTCGAGAATAGATTTGCA
GCATGCTAGTAGGCGTGCCAGTTCAAGTAACATGCAAATTGAGCCTTCTG
CTTCGCTGCAGTTGCAATCAGATTCTAATGTAGAGCAAGATGGTACAGTG
CCTTCCATGGAGACATTTCCTGTGATTCCTCCTGGAAGAGAAGGTTCTGT
AAATGATTCTTTCCCTAATGGGATAGAAAGTGGTGTTTCTGATTATGCAG
TGGATGCTATGGATACAGATGAAATGCAGCCTGGTTGGGGTGAGC
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