FC878013

Overview
NameFC878013
Unique NameFC878013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878013 vs. ExPASy Swiss-Prot
Match: MCFC_DICDI (Mitochondrial substrate carrier family protein C OS=Dictyostelium discoideum GN=mcfC PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.607e-22
Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  532 SDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIG--EQAVIPEGISKHVQRSK------YFIAGGIAGAASRTATAPLDRLKVVLQVQTAL-ARLVPTIRKIWKEEGFLGFFRGN 909
            S++EL R    +DK+ +  I F EWR+ L+L P+ + ++ I   W+   ++D G      IP  + K  + S       Y +AG +AG ASRT+TAPL+R+K++ Q+       L+   +  +K+ G  GFFRGN
Sbjct:  111 SEQELIRLFHRIDKNRDNQIDFNEWRELLVLLPN-SNLQLIISFWKDSQILDAGFDNGGFIPPMVEKKEKASSLRNTITYMLAGSVAGFASRTSTAPLERVKIMCQLNHGKPISLISAFKACYKDGGIKGFFRGN 244          

HSP 2 Score: 46.2098 bits (108), Expect = 1.607e-22
Identity = 24/94 (25.53%), Postives = 48/94 (51.06%), Query Frame = 2
Query:  221 IRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVK 502
            ++ LF+  D  N+G L   +I+ G   L+IP+  K  +      D ++DG V ++EF  +      +L  +F+ +D   +G +   E+ +++ K
Sbjct:   11 VKKLFDSLDKDNNGKLTREEIKEGFFKLRIPSSEKDIESFLTNVDKDKDGSVSFKEFEDFTIENIKKLKIVFEELDTNKSGTLDIHEIEESIKK 104          
BLAST of FC878013 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.539e-22
Identity = 48/138 (34.78%), Postives = 83/138 (60.14%), Query Frame = 1
Query:  520 GIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVQRS----KYFIAGGIAGAASRTATAPLDRLKVVLQVQTALAR---LVPTIRKIWKEEGFLGFFRGNG 912
            G++IS+++  + ++ +DK+    I + EWRD+ LL+P E  I  I  +W+   + D+GE   +P+  +   +++    ++ +AGG AGA SRT TAPLDRLKV++QV  + +    +V    ++ +E G    +RGNG
Sbjct:  111 GVKISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHPVE-NIPEIILYWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQVHASRSNNMCIVGGFTQMIREGGAKSLWRGNG 247          

HSP 2 Score: 36.5798 bits (83), Expect = 3.539e-22
Identity = 15/58 (25.86%), Postives = 37/58 (63.79%), Query Frame = 2
Query:  323 KYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDAL 496
            ++ + + +  D + DG++D++EF  Y+   E +L  +F+++D +++G I  +E+  +L
Sbjct:   50 QWKQKIVQAGDKDLDGQLDFEEFVHYLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSL 107          
BLAST of FC878013 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.539e-22
Identity = 48/138 (34.78%), Postives = 83/138 (60.14%), Query Frame = 1
Query:  520 GIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVQRS----KYFIAGGIAGAASRTATAPLDRLKVVLQVQTALAR---LVPTIRKIWKEEGFLGFFRGNG 912
            G++IS+++  + ++ +DK+    I + EWRD+ LL+P E  I  I  +W+   + D+GE   +P+  +   +++    ++ +AGG AGA SRT TAPLDRLKV++QV  + +    +V    ++ +E G    +RGNG
Sbjct:  111 GVKISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHPVE-NIPEIILYWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQVHASRSNNMGIVGGFTQMIREGGARSLWRGNG 247          

HSP 2 Score: 36.5798 bits (83), Expect = 3.539e-22
Identity = 15/58 (25.86%), Postives = 37/58 (63.79%), Query Frame = 2
Query:  323 KYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDAL 496
            ++ + + +  D + DG++D++EF  Y+   E +L  +F+++D +++G I  +E+  +L
Sbjct:   50 QWKQKIVQAGDKDLDGQLDFEEFVHYLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSL 107          
BLAST of FC878013 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.539e-22
Identity = 48/138 (34.78%), Postives = 83/138 (60.14%), Query Frame = 1
Query:  520 GIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVQRS----KYFIAGGIAGAASRTATAPLDRLKVVLQVQTALAR---LVPTIRKIWKEEGFLGFFRGNG 912
            G++IS+++  + ++ +DK+    I + EWRD+ LL+P E  I  I  +W+   + D+GE   +P+  +   +++    ++ +AGG AGA SRT TAPLDRLKV++QV  + +    +V    ++ +E G    +RGNG
Sbjct:  111 GVKISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHPVE-NIPEIILYWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQVHASRSNNMCIVGGFTQMIREGGARSLWRGNG 247          

HSP 2 Score: 36.5798 bits (83), Expect = 3.539e-22
Identity = 15/58 (25.86%), Postives = 37/58 (63.79%), Query Frame = 2
Query:  323 KYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDAL 496
            ++ + + +  D + DG++D++EF  Y+   E +L  +F+++D +++G I  +E+  +L
Sbjct:   50 QWKQKIVQAGDKDLDGQLDFEEFVHYLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSL 107          
BLAST of FC878013 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.604e-22
Identity = 47/138 (34.06%), Postives = 83/138 (60.14%), Query Frame = 1
Query:  520 GIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVQRS----KYFIAGGIAGAASRTATAPLDRLKVVLQVQTALAR---LVPTIRKIWKEEGFLGFFRGNG 912
            G++IS+++  + ++ +DK+    I + EWRD+ LL+P E  I  I  +W+   + D+GE   +P+  +   +++    ++ +AGG AGA SRT TAPLDRLKV++QV  + +    ++    ++ +E G    +RGNG
Sbjct:  111 GVKISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHPVE-NIPEIILYWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQVHASRSNNMCIIGGFTQMIREGGAKSLWRGNG 247          

HSP 2 Score: 36.5798 bits (83), Expect = 4.604e-22
Identity = 15/58 (25.86%), Postives = 37/58 (63.79%), Query Frame = 2
Query:  323 KYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDAL 496
            ++ + + +  D + DG++D++EF  Y+   E +L  +F+++D +++G I  +E+  +L
Sbjct:   50 QWKQKIVQAGDKDLDGQLDFEEFVHYLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSL 107          
BLAST of FC878013 vs. ExPASy Swiss-Prot
Match: CMC3_CAEBR (Probable calcium-binding mitochondrial carrier CBG00135 OS=Caenorhabditis briggsae GN=CBG00135 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.087e-20
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  520 GIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVQRS----KYFIAGGIAGAASRTATAPLDRLKVVLQV---QTALARLVPTIRKIWKEEGFLGFFRGNG 912
            G+ + D +    V+ +D+  +  +   E++DF+LLYP    +  +   W    ++DIGE   +PE  +    +S    ++ +AGG+AGA SRT TAP DR+KV LQV   +T    +V  +  +  E G   F+RGNG
Sbjct:  170 GVNLDDHKALSIVKKMDQSGSSSVNLNEFQDFMLLYP-STDMREMVDFWRHNLIIDIGEDGQVPEDFTPQELQSGVWWRHLVAGGVAGAMSRTCTAPFDRIKVYLQVNSTKTNKLGVVSCVHLLHAEGGLKSFWRGNG 306          

HSP 2 Score: 31.5722 bits (70), Expect = 3.087e-20
Identity = 28/102 (27.45%), Postives = 42/102 (41.18%), Query Frame = 2
Query:  206 ERDIRIRSLFNFFDAANSGYLDYAQIESGLSAL--QIPA----------------QYKYAK-------------DLFKVCDANRDGRVDYQEFRRYMDIKEM 418
            E++ +IR +++  DA N G +D   +   LS+    IPA                +  YA              ++F   D+NRDG VD  E + Y   KEM
Sbjct:   70 EKEKKIREMYDRLDADNDGSIDIRDLTQALSSQTPHIPATMAPKLLAKMKREDSDRVTYADFTNYVIAHEARLAEVFDQIDSNRDGEVDVSEIKSY--CKEM 169          
BLAST of FC878013 vs. ExPASy Swiss-Prot
Match: SCMC3_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.224e-18
Identity = 51/138 (36.96%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  520 GIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVQRS----KYFIAGGIAGAASRTATAPLDRLKVVLQVQTALA---RLVPTIRKIWKEEGFLGFFRGNG 912
            GI IS E+  + +  +D+D    I ++EWRD  LL+  E  +E++ + W+   ++DIGE   +P+  S+  + +    K  +AG +AGA SRT TAPLDRLKV +QV  + +    ++  +R + +E G L  +RGNG
Sbjct:  109 GISISLEQAEKILHSMDRDGTMTIDWQEWRDHFLLHSLE-NVEDVLYFWKHSTVLDIGECLTVPDEFSQEEKLTGMWWKQLVAGAVAGAVSRTGTAPLDRLKVFMQVHASKSNRLNILGGLRNMIQEGGVLSLWRGNG 245          
BLAST of FC878013 vs. ExPASy Swiss-Prot
Match: SCMC3_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Homo sapiens GN=SLC25A23 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.954e-18
Identity = 52/138 (37.68%), Postives = 80/138 (57.97%), Query Frame = 1
Query:  520 GIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVQRS----KYFIAGGIAGAASRTATAPLDRLKVVLQV---QTALARLVPTIRKIWKEEGFLGFFRGNG 912
            GI IS E+  + +  +D+D    I ++EWRD  LL+  E  +E++ + W+   ++DIGE   +P+  SK  + +    K  +AG +AGA SRT TAPLDRLKV +QV   +T    ++  +R +  E G    +RGNG
Sbjct:  110 GISISLEQAEKILHSMDRDGTMTIDWQEWRDHFLLHSLE-NVEDVLYFWKHSTVLDIGECLTVPDEFSKQEKLTGMWWKQLVAGAVAGAVSRTGTAPLDRLKVFMQVHASKTNRLNILGGLRSMVLEGGIRSLWRGNG 246          
BLAST of FC878013 vs. ExPASy Swiss-Prot
Match: SCM2A_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.698e-18
Identity = 46/138 (33.33%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  520 GIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEG--ISKHVQRS--KYFIAGGIAGAASRTATAPLDRLKVVLQVQTALAR---LVPTIRKIWKEEGFLGFFRGNG 912
            G+ IS ++  + ++ +DK+    I + EW+ +  L P E  I  I  +W+   + D+GE  ++P+   + +H+     ++ ++GG AGA SRT TAPLDRLKV++QV     +   L+  + ++ KE G    +RGNG
Sbjct:  111 GVHISLKQAEKVLKSMDKNGTMTIDWNEWKKYPTLQPAE-NIPEIILYWKHSTIFDVGESLMVPDEFTVEEHLTGMWWRHLVSGGGAGAVSRTCTAPLDRLKVLMQVHGCQGKSMCLMSGLTQMIKEGGVRSLWRGNG 247          

HSP 2 Score: 31.9574 bits (71), Expect = 7.698e-18
Identity = 14/58 (24.14%), Postives = 33/58 (56.90%), Query Frame = 2
Query:  323 KYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDAL 496
            ++ K   K  +   DG++D++EF  Y+   E +L  +F+++D +  G +   ++ ++L
Sbjct:   50 RWRKKSLKTEEKEHDGQLDFEEFVHYLQDHEKDLKLVFKSMDRKIAGQVNANDIVNSL 107          
BLAST of FC878013 vs. ExPASy Swiss-Prot
Match: SCMC1_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.882e-17
Identity = 49/138 (35.51%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  520 GIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVQRS----KYFIAGGIAGAASRTATAPLDRLKVVLQV---QTALARLVPTIRKIWKEEGFLGFFRGNG 912
            GI +SD++  + +  +D D    + + EWR+  L  P E  ++ I  +W++  ++DIG+   IP+  ++  + +    K   AGG+AGA SRT TAPLDR+KV +QV   +T    LV   +++ KE G    +RGNG
Sbjct:  120 GINLSDKDAEKILHSIDVDGTMTLDWNEWREHFLFNPAE-DLQQIIRYWKKSTVLDIGDSLTIPDEFTEEEKTTGMWWKQLAAGGVAGAVSRTGTAPLDRMKVFMQVHSSKTNKISLVNGFKQMIKEGGVASLWRGNG 256          
The following BLAST results are available for this feature:
BLAST of FC878013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
MCFC_DICDI1.607e-2234.81Mitochondrial substrate carrier family protein C O... [more]
SCMC2_MOUSE3.539e-2234.78Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_HUMAN3.539e-2234.78Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_BOVIN3.539e-2234.78Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_RAT4.604e-2234.06Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC3_CAEBR3.087e-2034.06Probable calcium-binding mitochondrial carrier CBG... [more]
SCMC3_MOUSE2.224e-1836.96Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC3_HUMAN4.954e-1837.68Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2A_DANRE7.698e-1833.33Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_DANRE1.882e-1735.51Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA85CC10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878013 ID=FC878013; Name=FC878013; organism=Citrus clementina; type=EST; length=912bp
ATCGATGCTTGTGGAGCAACAATCGAATCTCGTAATTTTGATTAAAATCT
AGGGGCAGATGACCGGAGCAGGGGCAGGACACGCGGTGGAACGCGTCGGA
TTGCCAAAGATGGAGTCGACCCGCTCCGCTTCATGCAACCCGGTGAGGAA
ATCGGGTCCGGTCACGATGGACCACGTGCTGCTCGCGTTACGCGAGAGCA
AGGAAGAGAGGGACATCCGAATCCGGAGCCTCTTCAATTTCTTCGATGCG
GCGAATTCCGGATACTTGGATTACGCGCAGATCGAGAGCGGGTTGTCGGC
GCTGCAGATTCCGGCACAGTACAAGTACGCGAAGGATTTGTTCAAAGTCT
GCGACGCAAACAGAGACGGACGCGTCGATTATCAGGAGTTTCGTCGATAC
ATGGACATTAAAGAGATGGAGCTTTATAAGATTTTTCAAACTATTGATGT
CGAGCACAATGGATGCATTTTGCCCGAAGAGCTTTGGGACGCGCTTGTTA
AGGCTGTTTCTGTTTTTCAGGGATCGAGATTAGTGACGAGGAATTGGCTC
GTTTTGTGGAGCATGTTGATAAGGATAATAATGGAATCATAACTTTTGAA
GAATGGAGAGATTTCCTTCTACTCTATCCTCATGAGGCAACTATTGAAAA
TATTTATCATCATTGGGAGAGGGTATGCCTCGTAGATATTGGAGAACAGG
CTGTTATTCCAGAAGGCATCAGTAAACATGTTCAGAGAAGCAAATACTTT
ATTGCTGGAGGAATAGCAGGTGCTGCTTCTCGTACTGCAACTGCTCCTCT
TGACCGCCTGAAGGTTGTATTGCAAGTCCAGACGGCACTAGCTCGTCTTG
TGCCAACTATAAGAAAGATATGGAAGGAAGAAGGTTTTTTGGGATTTTTC
CGAGGTAATGGG
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