FC878025

Overview
NameFC878025
Unique NameFC878025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:166..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.907e-36
Identity = 70/122 (57.38%), Postives = 94/122 (77.05%), Query Frame = 3 
Query:  435 EQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E  +L A ++  I    PN+KWND+ GL++AKQ ++EAV+ P+++PQ FTG   PW+  LLYGPPGTGK+ LAKAVATE  +TFF+IS+S +VSKW G+SEKLV  LF++AR +APS IF+D
Sbjct:  233 EMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLD 354
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.907e-36
Identity = 70/122 (57.38%), Postives = 94/122 (77.05%), Query Frame = 3 
Query:  435 EQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E  +L A ++  I    PN+KWND+ GL++AKQ ++EAV+ P+++PQ FTG   PW+  LLYGPPGTGK+ LAKAVATE  +TFF+IS+S +VSKW G+SEKLV  LF++AR +APS IF+D
Sbjct:  232 EMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLD 353
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.466e-36
Identity = 68/122 (55.74%), Postives = 96/122 (78.69%), Query Frame = 3 
Query:  435 EQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E  +L A ++  I  + PNV+W+D+ GL++AK+ ++EAV+ P+++PQ FTG   PW+  LLYGPPGTGK+ LAKAVATE ++TFF+IS+S +VSKW G+SEKLV  LF++AR +APS IF+D
Sbjct:  236 EMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIRYPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLD 357
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL2_XENLA (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.466e-36
Identity = 68/122 (55.74%), Postives = 96/122 (78.69%), Query Frame = 3 
Query:  435 EQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E  +L A ++  I  + PNV+W+D+ GL++AK+ ++EAV+ P+++PQ FTG   PW+  LLYGPPGTGK+ LAKAVATE ++TFF+IS+S +VSKW G+SEKLV  LF++AR +APS IF+D
Sbjct:  236 EMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIRYPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLD 357
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.157e-33
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   II + PNVKW+D+A LE AK+ L+EAV+LP+  P+FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  190 LERDIISQNPNVKWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTTIFID 303
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.974e-33
Identity = 69/114 (60.53%), Postives = 88/114 (77.19%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   II + PN++W+D+A LE AK+ L+EAV+LP+  P+FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF+ISSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  196 LERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 309
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.974e-33
Identity = 69/114 (60.53%), Postives = 88/114 (77.19%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   II + PN++W+D+A LE AK+ L+EAV+LP+  P+FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF+ISSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  192 LERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 305
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.974e-33
Identity = 68/125 (54.40%), Postives = 92/125 (73.60%), Query Frame = 3 
Query:  426 EDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E P++  L A L   ++   P V+W+DVAGL  AK+ L+EAV+LP+  P++F G R+PW+  L++GPPGTGK+ LAKAVATE  +TFF++SS+ L SKW GESE++V  LF +AR  APS IFID
Sbjct:  215 EGPDE-DLAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFID 338
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.367e-33
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 3 
Query:  435 EQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E   L   L   II + PNV W+D+A LE AK+ L+EAV+LP+  P+FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  182 EDKDLIDALERDIISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 303
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.671e-32
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   II + PN++W+D+A L  AK+ L+EAV+LP+  P+FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  196 LERDIISQNPNIRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 309
The following BLAST results are available for this feature:
BLAST of FC878025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 355
Match NameE-valueIdentityDescription
KATL2_MOUSE1.907e-3657.38Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
KATL2_HUMAN1.907e-3657.38Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
KATL2_XENTR9.466e-3655.74Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
KATL2_XENLA9.466e-3655.74Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
KTNA1_SALSA1.157e-3361.40Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
KTNA1_XENTR1.974e-3360.53Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
KTNA1_XENLA1.974e-3360.53Katanin p60 ATPase-containing subunit (Fragment) O... [more]
KTNA1_ARATH1.974e-3354.40Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
KTNA1_DANRE3.367e-3358.20Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
KTNA1_CHICK1.671e-3258.77Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878025 ID=FC878025; Name=FC878025; organism=Citrus clementina; type=EST; length=801bp
CTCAAATTCGAAATCGAAATCTTTCAATTCACCCAAAAATCAAAATTAGT
AATTTCACATGCGATCCGATCATAAACCCTAACCAATAAATTTATAATTT
GAAGATGTACAGCAACTTCAAGGAACAGGCAATCGAGTACGTGAAACAAG
CCGTGCAAGAAGACAATGCTGGAAATTACGCAAAAGCCTTCCCTCTTTAC
ATGAACGCCTTGGAGTATTTCAAAACCCACTTGAAGTACGAGAAGAATCC
CAAGATTAAGGAGGCGATCACTCAGAAATTCACCGAGTATTTGCGCCGGG
CCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGGCCCGGCCCCGCTCAC
AACGGGGACGCTGCGGTGGCGACCCGGCCTAAGACGAAGCCGAAGGATGG
TGGTGATGGTGGCGGCGGTGATGGGGAGGATCCGGAGCAGGCGAAGCTGA
GGGCTGGATTGAATTCGGCGATTATTAGGGAGAAGCCTAATGTTAAGTGG
AATGACGTGGCGGGTTTAGAAAGCGCTAAGCAAGCTTTGCAGGAGGCTGT
GATTTTGCCGGTTAAGTTTCCCCAGTTTTTCACCGGTAAGAGACAACCGT
GGAGAGCATTTCTATTGTATGGACCACCTGGAACTGGAAAGTCATACCTG
GCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTATTTCTTC
ATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTTGTCTCAA
GCCTTTTCCAGATGGCTCGTGAAAATGCTCCTTCCATTATTTTTATTGAT
G
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