FC878025

Overview
NameFC878025
Unique NameFC878025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:166..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.182e-32
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   II + PNV+W D+A L  AK+ LQEAV+LP+  P+FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  +P+ IFID
Sbjct:  195 LERDIISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFID 308
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.182e-32
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   II + PNV+W D+A L  AK+ LQEAV+LP+  P+FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  +P+ IFID
Sbjct:  195 LERDIISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFID 308
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.182e-32
Identity = 67/114 (58.77%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   I+   PN+ W+D+A LE AK+ L+EAV+LP+  P FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  192 LERDIVSRNPNIHWDDIADLEDAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 305
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.850e-32
Identity = 67/114 (58.77%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   I++  PNV W D+AGL  AK+ L+EAV+LP+  P +F G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SS+ L SK+ GESEKLV  LF+MAR  APS IFID
Sbjct:  220 LERDIVQRNPNVHWADIAGLTEAKRLLEEAVVLPLWMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPSTIFID 333
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.850e-32
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   II + PNV+W+D+A L  AK+ L+EAV+LP+  P+FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  +P+ IFID
Sbjct:  195 LERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFID 308
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.850e-32
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   II + PNV+W+D+A L  AK+ L+EAV+LP+  P+FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  +P+ IFID
Sbjct:  195 LERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFID 308
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   I+   P++ W+D+A LE AK+ L+EAV+LP+  P FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  194 LERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 307
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   I+   P++ W+D+A LE AK+ L+EAV+LP+  P FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  192 LERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 305
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   I+   P++ W+D+A LE AK+ L+EAV+LP+  P FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  194 LERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 307
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   I+   P++ W+D+A LE AK+ L+EAV+LP+  P FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  194 LERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 307
The following BLAST results are available for this feature:
BLAST of FC878025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 355
Match NameE-valueIdentityDescription
KTNA1_RAT2.182e-3259.65Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
KTNA1_MOUSE2.182e-3259.65Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
KATL1_DANRE2.182e-3258.77Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KTNA1_STRPU2.850e-3258.77Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
KTNA1_MACFA2.850e-3258.77Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN2.850e-3258.77Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
KATL1_SORAR8.293e-3257.89Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RAT8.293e-3257.89Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RABIT8.293e-3257.89Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN8.293e-3257.89Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878025 ID=FC878025; Name=FC878025; organism=Citrus clementina; type=EST; length=801bp
CTCAAATTCGAAATCGAAATCTTTCAATTCACCCAAAAATCAAAATTAGT
AATTTCACATGCGATCCGATCATAAACCCTAACCAATAAATTTATAATTT
GAAGATGTACAGCAACTTCAAGGAACAGGCAATCGAGTACGTGAAACAAG
CCGTGCAAGAAGACAATGCTGGAAATTACGCAAAAGCCTTCCCTCTTTAC
ATGAACGCCTTGGAGTATTTCAAAACCCACTTGAAGTACGAGAAGAATCC
CAAGATTAAGGAGGCGATCACTCAGAAATTCACCGAGTATTTGCGCCGGG
CCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGGCCCGGCCCCGCTCAC
AACGGGGACGCTGCGGTGGCGACCCGGCCTAAGACGAAGCCGAAGGATGG
TGGTGATGGTGGCGGCGGTGATGGGGAGGATCCGGAGCAGGCGAAGCTGA
GGGCTGGATTGAATTCGGCGATTATTAGGGAGAAGCCTAATGTTAAGTGG
AATGACGTGGCGGGTTTAGAAAGCGCTAAGCAAGCTTTGCAGGAGGCTGT
GATTTTGCCGGTTAAGTTTCCCCAGTTTTTCACCGGTAAGAGACAACCGT
GGAGAGCATTTCTATTGTATGGACCACCTGGAACTGGAAAGTCATACCTG
GCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTATTTCTTC
ATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTTGTCTCAA
GCCTTTTCCAGATGGCTCGTGAAAATGCTCCTTCCATTATTTTTATTGAT
G
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