FC878025

Overview
NameFC878025
Unique NameFC878025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:166..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   I+   P++ W+D+A LE AK+ L+EAV+LP+  P FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  194 LERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 307          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   I+   P++ W+D+A LE AK+ L+EAV+LP+  P FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  192 LERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 305          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L   I+   P++ W+D+A LE AK+ L+EAV+LP+  P FF G R+PW+  L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFID
Sbjct:  194 LERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 307          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.564e-30
Identity = 65/114 (57.02%), Postives = 89/114 (78.07%), Query Frame = 3
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            LN  ++ ++  V W D+AGL +AK +L+EAV+ P   P  F G R+P R  LL+GPPGTGK+ +AKAVATE++STFFS+S+S L+SK++GESEKLV +LF MA++ +PSIIFID
Sbjct:  458 LNEILVTDE-KVYWEDIAGLRNAKNSLKEAVVYPFLRPDLFKGLREPVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFID 570          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.668e-30
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V W+D+AGLESAK +L+EAV+ P   P  F G R+P R  LL+GPPGTGK+ LA+AVATE+ STFFSIS+S L SK++GESEKLV +LF +A++ +PSIIF+D
Sbjct:  595 IVVHGDEVHWDDIAGLESAKYSLKEAVVYPFLRPDLFRGLREPVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKLSPSIIFVD 704          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.762e-30
Identity = 67/110 (60.91%), Postives = 84/110 (76.36%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+   P VK++D+AG E AKQALQE VILP   P+ FTG R P R  LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFID
Sbjct:  329 IVDSGPAVKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFID 438          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.729e-29
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+   P+VK+ D+AG + AKQALQE VILP   P+ FTG R P R  LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFID
Sbjct:  316 IVDSGPSVKFADIAGQDLAKQALQEIVILPSIRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFID 425          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.258e-29
Identity = 66/110 (60.00%), Postives = 83/110 (75.45%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+   P VK+ D+AG + AKQALQE VILP   P+ FTG R P R  LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFID
Sbjct:  319 IVDSGPTVKFADIAGQDLAKQALQEIVILPSIRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFID 428          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 129.413 bits (324), Expect = 2.258e-29
Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 3
Query:  438 QAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            + KL   +   I+     V+W D+AG E AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TFFSIS++ L SK++G+ EKLV +LF +ARE  PSIIFID
Sbjct:  482 EPKLVQIIMDEIVEGGAKVQWQDIAGQEVAKQALQEMVILPSVRPELFTGLRTPAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLVRALFAVARELQPSIIFID 602          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.950e-29
Identity = 78/164 (47.56%), Postives = 99/164 (60.37%), Query Frame = 3
Query:  333 GPGPA---HNGDAAV-----ATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            GPGPA   H G          + P T  +           D   A L   + + I+     VK++D+AG E AKQALQE VILP   P+ FTG R P R  LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFID
Sbjct:  279 GPGPAATTHKGTPKPNRTNKPSTPTTAVRKKKDLKNFRNVDSNLANL---IMNEIVDNGTAVKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFID 439          
The following BLAST results are available for this feature:
BLAST of FC878025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 355
Match NameE-valueIdentityDescription
KATL1_OTOGA8.293e-3257.89Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_MOUSE8.293e-3257.89Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN8.293e-3257.89Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
TBP6_YEAST1.564e-3057.02Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
SAP1_YEAST2.668e-3059.09Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 P... [more]
SPAST_CHICK7.762e-3060.91Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]
SPAST_XENLA1.729e-2960.00Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
SPAST_XENTR2.258e-2960.00Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_ANOGA2.258e-2955.37Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
SPAST_MOUSE2.950e-2947.56Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878025 ID=FC878025; Name=FC878025; organism=Citrus clementina; type=EST; length=801bp
CTCAAATTCGAAATCGAAATCTTTCAATTCACCCAAAAATCAAAATTAGT
AATTTCACATGCGATCCGATCATAAACCCTAACCAATAAATTTATAATTT
GAAGATGTACAGCAACTTCAAGGAACAGGCAATCGAGTACGTGAAACAAG
CCGTGCAAGAAGACAATGCTGGAAATTACGCAAAAGCCTTCCCTCTTTAC
ATGAACGCCTTGGAGTATTTCAAAACCCACTTGAAGTACGAGAAGAATCC
CAAGATTAAGGAGGCGATCACTCAGAAATTCACCGAGTATTTGCGCCGGG
CCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGGCCCGGCCCCGCTCAC
AACGGGGACGCTGCGGTGGCGACCCGGCCTAAGACGAAGCCGAAGGATGG
TGGTGATGGTGGCGGCGGTGATGGGGAGGATCCGGAGCAGGCGAAGCTGA
GGGCTGGATTGAATTCGGCGATTATTAGGGAGAAGCCTAATGTTAAGTGG
AATGACGTGGCGGGTTTAGAAAGCGCTAAGCAAGCTTTGCAGGAGGCTGT
GATTTTGCCGGTTAAGTTTCCCCAGTTTTTCACCGGTAAGAGACAACCGT
GGAGAGCATTTCTATTGTATGGACCACCTGGAACTGGAAAGTCATACCTG
GCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTATTTCTTC
ATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTTGTCTCAA
GCCTTTTCCAGATGGCTCGTGAAAATGCTCCTTCCATTATTTTTATTGAT
G
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