FC878025

Overview
NameFC878025
Unique NameFC878025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:166..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.571e-29
Identity = 65/118 (55.08%), Postives = 87/118 (73.73%), Query Frame = 3
Query:  459 LNSAIIRE----KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            L  +I+RE       V W+D++GLE AK +L+EAV+ P   P  F G R+P R  LL+GPPGTGK+ LA+AVATE+ S FFSIS+S L SK++GESEKLV +LF +A++ +PSIIF+D
Sbjct:  441 LGKSILREIVVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLREPARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVD 558          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.571e-29
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 3
Query:  492 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            VK++D+AG E AKQALQE VILP   P+ FTG R P R  LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFID
Sbjct:  304 VKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFID 406          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.571e-29
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 3
Query:  492 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            VK++D+AG E AKQALQE VILP   P+ FTG R P R  LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFID
Sbjct:  336 VKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFID 438          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.571e-29
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 3
Query:  492 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            VK++D+AG E AKQALQE VILP   P+ FTG R P R  LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFID
Sbjct:  337 VKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFID 439          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.571e-29
Identity = 61/114 (53.51%), Postives = 82/114 (71.93%), Query Frame = 3
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            + S I+     + W DVAGLE AK+AL+E V+LP + P  FTG R P +  LL+GPPGTGK+ + + VA++A +TFF+IS+S L SKW+GE EKLV +LF +AR   PS+IFID
Sbjct:  302 IESEIMSVNNQIGWADVAGLEGAKKALKEIVVLPFQRPDIFTGLRAPPKGVLLFGPPGTGKTMIGRCVASQAQATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFID 415          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.582e-29
Identity = 58/100 (58.00%), Postives = 78/100 (78.00%), Query Frame = 3
Query:  501 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            +D+ G+   KQ L EAV LP+  P+FF G R PW+A +L GPPGTGK+ +A+A+A+E+ STFF++SS+DL SKW G+SEK+V  LF++AR  APSIIFID
Sbjct:  193 DDIIGMHDVKQVLHEAVTLPLLVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFID 292          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.121e-28
Identity = 62/114 (54.39%), Postives = 86/114 (75.44%), Query Frame = 3
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            +N  I   +P V W+D+AGL+ AK +L+EAVI P   P+ F G R+P +  LL+GPPGTGK+ LA+AVATEA +TFFSIS+S L SK++G+SEKLV +LF++A+    S+IF+D
Sbjct:  366 MNEIISNHEP-VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLREPVQGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVD 478          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.121e-28
Identity = 76/170 (44.71%), Postives = 99/170 (58.24%), Query Frame = 3
Query:  309 IRAVLDDGGPGPA-HNGDAAV-----ATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            +  V    GP P  H G          + P T  +           D   A L   + + I+     VK++D+AG + AKQALQE VILP   P+ FTG R P R  LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFID
Sbjct:  275 VSGVKQGSGPAPTTHKGTPKTNRTNKPSTPTTATRKKKDLKNFRNVDSNLANL---IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFID 441          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.121e-28
Identity = 66/120 (55.00%), Postives = 89/120 (74.17%), Query Frame = 3
Query:  441 AKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            +KL + + + I+     V+++D+AG + AKQALQE VILP   P+ FTG R P R  LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFID
Sbjct:  275 SKLASLILNEIVDSGSVVRFDDIAGQDLAKQALQEIVILPALRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVARELQPSIIFID 394          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.464e-28
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = 3
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            + S I+     + W DVAGLE AK+AL+E V+LP K P  FTG R P +  LL+GPPGTGK+ + + VA++  +TFF+IS+S L SKW+GE EKLV +LF +AR   PS+IFID
Sbjct:  302 IESEIMSVNNEIGWADVAGLEGAKKALREIVVLPFKRPDVFTGIRAPPKGVLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFID 415          
The following BLAST results are available for this feature:
BLAST of FC878025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 355
Match NameE-valueIdentityDescription
YKX4_SCHPO6.571e-2955.08Uncharacterized AAA domain-containing protein C328... [more]
SPAST_RAT6.571e-2963.11Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_PIG6.571e-2963.11Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_BOVIN6.571e-2963.11Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
FIGL1_CAEBR6.571e-2953.51Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
MEI1_CAEEL8.582e-2958.00Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
SUR2_SCHPO1.121e-2854.39Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]
SPAST_HUMAN1.121e-2844.71Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
SPAST_DANRE1.121e-2855.00Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
FIGL1_CAEEL1.464e-2853.51Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878025 ID=FC878025; Name=FC878025; organism=Citrus clementina; type=EST; length=801bp
CTCAAATTCGAAATCGAAATCTTTCAATTCACCCAAAAATCAAAATTAGT
AATTTCACATGCGATCCGATCATAAACCCTAACCAATAAATTTATAATTT
GAAGATGTACAGCAACTTCAAGGAACAGGCAATCGAGTACGTGAAACAAG
CCGTGCAAGAAGACAATGCTGGAAATTACGCAAAAGCCTTCCCTCTTTAC
ATGAACGCCTTGGAGTATTTCAAAACCCACTTGAAGTACGAGAAGAATCC
CAAGATTAAGGAGGCGATCACTCAGAAATTCACCGAGTATTTGCGCCGGG
CCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGGCCCGGCCCCGCTCAC
AACGGGGACGCTGCGGTGGCGACCCGGCCTAAGACGAAGCCGAAGGATGG
TGGTGATGGTGGCGGCGGTGATGGGGAGGATCCGGAGCAGGCGAAGCTGA
GGGCTGGATTGAATTCGGCGATTATTAGGGAGAAGCCTAATGTTAAGTGG
AATGACGTGGCGGGTTTAGAAAGCGCTAAGCAAGCTTTGCAGGAGGCTGT
GATTTTGCCGGTTAAGTTTCCCCAGTTTTTCACCGGTAAGAGACAACCGT
GGAGAGCATTTCTATTGTATGGACCACCTGGAACTGGAAAGTCATACCTG
GCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTATTTCTTC
ATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTTGTCTCAA
GCCTTTTCCAGATGGCTCGTGAAAATGCTCCTTCCATTATTTTTATTGAT
G
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