FC878025

Overview
NameFC878025
Unique NameFC878025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:166..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.563e-28
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 3 
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W+D+AG E AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  485 IVEGGAKVEWSDIAGQEVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 594
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.563e-28
Identity = 66/128 (51.56%), Postives = 85/128 (66.41%), Query Frame = 3 
Query:  438 QAKLRAGLNSAI-------IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            ++ L  G++ AI       I +   V+ +DVAG  SAK  L+EAVILP   P  F+G RQP +  LL+GPPG GK+ LAKAVA E+   FF+IS+S L SKW+G+SEK +  LFQ+AR   PSIIFID
Sbjct:  241 RSNLLKGVDKAIGERLLDEILDSTGVRMDDVAGCHSAKATLEEAVILPALNPNLFSGLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFID 368
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.488e-28
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 3 
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W D+AG E AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  503 IVEGGAKVEWTDIAGQEVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFID 612
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.488e-28
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 3 
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W D+AG E AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  503 IVEGGAKVEWTDIAGQEVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFID 612
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.488e-28
Identity = 62/109 (56.88%), Postives = 77/109 (70.64%), Query Frame = 3 
Query:  474 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            + +   V+ +DVAG  SAK AL+EAVILP   P  F G RQP +  LL+GPPG GK+ LAKAVA E+   FF+IS+S L SKW+G+SEK +  LFQ+AR   PSIIFID
Sbjct:  230 VLDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFKGLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFID 338
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.239e-27
Identity = 71/156 (45.51%), Postives = 93/156 (59.62%), Query Frame = 3 
Query:  333 GPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            G  P   G AA    P T  +               ++L   +   ++   P V ++D+AG E AKQAL E VILP   P+ FTG R P +  LL+GPPG GK+ LAKAVA E++STF +IS++ L SK++GE EKLV +LF +ARE  PSIIFID
Sbjct:  318 GRQPTTRGGAAHRGGPPTVSQRSLLSSRVPPLKGVDSRLAHLILDEVVDGAPPVLFSDIAGQEVAKQALSEMVILPTDRPELFTGLRAPPKGLLLFGPPGNGKTMLAKAVAHESNSTFLNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFID 473
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.239e-27
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 3 
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W+D+AG + AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  484 IVEGGAKVEWSDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 593
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 3 
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W D+AG + AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  473 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 582
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 3 
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W D+AG + AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  492 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 601
[Close]
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 3 
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W D+AG + AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  473 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 582
The following BLAST results are available for this feature:
BLAST of FC878025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 355
Match NameE-valueIdentityDescription
SPAST_DROAN5.563e-2856.36Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
SPAST_CAEBR5.563e-2851.56Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
SPAST_DROPS9.488e-2856.36Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_DROPE9.488e-2856.36Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
SPAST_CAEEL9.488e-2856.88Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
SPAST_IXOSC1.239e-2745.51Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]
SPAST_DROVI1.239e-2755.45Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
SPAST_DROYA1.618e-2755.45Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROWI1.618e-2755.45Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
SPAST_DROSI1.618e-2755.45Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878025 ID=FC878025; Name=FC878025; organism=Citrus clementina; type=EST; length=801bp
CTCAAATTCGAAATCGAAATCTTTCAATTCACCCAAAAATCAAAATTAGT
AATTTCACATGCGATCCGATCATAAACCCTAACCAATAAATTTATAATTT
GAAGATGTACAGCAACTTCAAGGAACAGGCAATCGAGTACGTGAAACAAG
CCGTGCAAGAAGACAATGCTGGAAATTACGCAAAAGCCTTCCCTCTTTAC
ATGAACGCCTTGGAGTATTTCAAAACCCACTTGAAGTACGAGAAGAATCC
CAAGATTAAGGAGGCGATCACTCAGAAATTCACCGAGTATTTGCGCCGGG
CCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGGCCCGGCCCCGCTCAC
AACGGGGACGCTGCGGTGGCGACCCGGCCTAAGACGAAGCCGAAGGATGG
TGGTGATGGTGGCGGCGGTGATGGGGAGGATCCGGAGCAGGCGAAGCTGA
GGGCTGGATTGAATTCGGCGATTATTAGGGAGAAGCCTAATGTTAAGTGG
AATGACGTGGCGGGTTTAGAAAGCGCTAAGCAAGCTTTGCAGGAGGCTGT
GATTTTGCCGGTTAAGTTTCCCCAGTTTTTCACCGGTAAGAGACAACCGT
GGAGAGCATTTCTATTGTATGGACCACCTGGAACTGGAAAGTCATACCTG
GCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTATTTCTTC
ATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTTGTCTCAA
GCCTTTTCCAGATGGCTCGTGAAAATGCTCCTTCCATTATTTTTATTGAT
G
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