FC878025

Overview
NameFC878025
Unique NameFC878025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:166..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W D+AG + AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  473 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 582          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 63/121 (52.07%), Postives = 83/121 (68.60%), Query Frame = 3
Query:  438 QAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            + KL   +   I+     V+W D+AG + AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  469 EQKLVQLIMDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFID 589          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W D+AG + AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  473 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 582          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W D+AG + AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  497 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 606          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+     V+W D+AG + AKQALQE VILP   P+ FTG R P +  LL+GPPG GK+ LA+AVATE  +TF +IS++ L SK++G+ EKLV +LF +AR   PSIIFID
Sbjct:  473 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 582          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 3
Query:  492 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            V W D+AGLESAK    EA+I+P++ P  FTG R P R  LL+GPPGTGK+ +AK++A++A + FFSI+ S L SKW+G++EKLV +LF +A  + P+IIFID
Sbjct:  247 VAWEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRCPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFID 349          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.114e-27
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            ++ E PNVKW D+ GLE AKQ L EAV  P+K+P+ F     +P R  LL+GPPGTGK+ LAKAVA E+++ F S+   +L+SKW+GESEK V  +F+ AR+ AP +IF D
Sbjct:  445 VLVEVPNVKWEDIGGLEHAKQELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCVIFFD 555          

HSP 2 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 3
Query:  477 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            R  P+V + D+ GL+   + ++E + LP+K P+ F     +P +  LLYGPPGTGK+ +AKAVA E D+ F  IS  +++SK+ GESE+ +  +F+ A+ENAPSIIFID
Sbjct:  174 RAVPDVTYEDIGGLKRELRLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFID 282          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.761e-27
Identity = 64/114 (56.14%), Postives = 81/114 (71.05%), Query Frame = 3
Query:  459 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            +N  + R+ P VKW+DV GL+  KQ+L E+VILP   P  FTG R P +  LL+GPPG GK+ +AKAVA E+  TFFSISSS L SK++G+ EKLV +LF +A    PSIIFID
Sbjct:  371 MNEIMDRKNP-VKWDDVVGLDKVKQSLMESVILPNLRPDVFTGLRAPPKGLLLFGPPGNGKTMIAKAVAYESKVTFFSISSSSLTSKYVGDGEKLVRALFAVATHFQPSIIFID 483          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.032e-27
Identity = 56/112 (50.00%), Postives = 80/112 (71.43%), Query Frame = 3
Query:  465 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            S I+   P + W+D+AGLE AK  ++E V+ P+  P  FTG R P +  LL+GPPGTGK+ + K +A ++ +TFFSIS+S L SKW+GE EK+V +LF +AR + P++IFID
Sbjct:  371 SEIMDHGPPLNWDDIAGLEFAKTTIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFID 482          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.032e-27
Identity = 56/112 (50.00%), Postives = 80/112 (71.43%), Query Frame = 3
Query:  465 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            S I+   P + W+D+AGLE AK  ++E V+ P+  P  FTG R P +  LL+GPPGTGK+ + K +A ++ +TFFSIS+S L SKW+GE EK+V +LF +AR + P++IFID
Sbjct:  370 SEIMDHGPPLNWDDIAGLEFAKTTIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFID 481          
The following BLAST results are available for this feature:
BLAST of FC878025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 355
Match NameE-valueIdentityDescription
SPAST_DROSE1.618e-2755.45Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROMO1.618e-2752.07Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
SPAST_DROME1.618e-2755.45Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROGR1.618e-2755.45Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_DROER1.618e-2755.45Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
FIGL1_DROME1.618e-2755.34Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
Y1297_ARCFU2.114e-2753.15Cell division cycle protein 48 homolog AF_1297 OS=... [more]
SPAST_DICDI2.761e-2756.14Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
FIGL1_XENTR8.032e-2750.00Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
FIGL1_XENLA8.032e-2750.00Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878025 ID=FC878025; Name=FC878025; organism=Citrus clementina; type=EST; length=801bp
CTCAAATTCGAAATCGAAATCTTTCAATTCACCCAAAAATCAAAATTAGT
AATTTCACATGCGATCCGATCATAAACCCTAACCAATAAATTTATAATTT
GAAGATGTACAGCAACTTCAAGGAACAGGCAATCGAGTACGTGAAACAAG
CCGTGCAAGAAGACAATGCTGGAAATTACGCAAAAGCCTTCCCTCTTTAC
ATGAACGCCTTGGAGTATTTCAAAACCCACTTGAAGTACGAGAAGAATCC
CAAGATTAAGGAGGCGATCACTCAGAAATTCACCGAGTATTTGCGCCGGG
CCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGGCCCGGCCCCGCTCAC
AACGGGGACGCTGCGGTGGCGACCCGGCCTAAGACGAAGCCGAAGGATGG
TGGTGATGGTGGCGGCGGTGATGGGGAGGATCCGGAGCAGGCGAAGCTGA
GGGCTGGATTGAATTCGGCGATTATTAGGGAGAAGCCTAATGTTAAGTGG
AATGACGTGGCGGGTTTAGAAAGCGCTAAGCAAGCTTTGCAGGAGGCTGT
GATTTTGCCGGTTAAGTTTCCCCAGTTTTTCACCGGTAAGAGACAACCGT
GGAGAGCATTTCTATTGTATGGACCACCTGGAACTGGAAAGTCATACCTG
GCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTATTTCTTC
ATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTTGTCTCAA
GCCTTTTCCAGATGGCTCGTGAAAATGCTCCTTCCATTATTTTTATTGAT
G
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