FC878025

Overview
NameFC878025
Unique NameFC878025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:166..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 55/110 (50.00%), Postives = 79/110 (71.82%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+   P V W+D+AG+E AK  ++E V+ P+  P  FTG R P +  LL+GPPGTGK+ + K +A+++ +TFFSIS+S L SKW+GE EK+V +LF +AR   P++IFID
Sbjct:  400 IMDHGPPVHWDDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFID 509          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+   P V W D+AG+E AK  ++E V+ P+  P  FTG R P +  LL+GPPGTGK+ + K +A+++ +TFFSIS+S L SKW+GE EK+V +LF +AR   P++IFID
Sbjct:  394 IMDHGPPVHWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFID 503          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I+   P V W D+AG+E AK  ++E V+ P+  P  FTG R P +  LL+GPPGTGK+ + K +A+++ +TFFSIS+S L SKW+GE EK+V +LF +AR   P++IFID
Sbjct:  391 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFID 500          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.986e-26
Identity = 54/108 (50.00%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  480 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E P V WND+ GL++ KQ L+EAV  P++FP+ FT     P +  LL+GPPGTGK+ LAKAVATE+ + F ++   +++SKW+GESEK +  +F+ AR+ AP++IF D
Sbjct:  480 EVPKVNWNDIGGLDNVKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPTVIFFD 587          

HSP 2 Score: 101.679 bits (252), Expect = 5.043e-21
Identity = 49/106 (46.23%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  486 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            P V W D+  LE AKQ ++E V  P++ P+ F      P +  LLYGPPGTGK+ LA+A+A E  + F +++  +++SK+ GESE+ +  +F+ A ENAPSIIFID
Sbjct:  207 PKVSWEDIGDLEEAKQKIREIVEWPMRHPELFQRLGIDPPKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEENAPSIIFID 312          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.800e-26
Identity = 58/110 (52.73%), Postives = 81/110 (73.64%), Query Frame = 3
Query:  474 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-FFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I  + +VK +D+ G E+AK+AL+E VILP   P  F+G RQP +  LL+GPPG GK+ LA+AVA E  ST F ++S++ L SKW+G++EK+V +LFQ+AR   P+IIFID
Sbjct:  169 ILNQDDVKMSDIIGAETAKRALEETVILPTVNPSLFSGLRQPAQGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFID 278          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.978e-25
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 3
Query:  432 PEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            PE    RA   +  + E+PNV++ D+ GLE   Q ++E V LP+K P+ F     +P +  LLYGPPGTGK+ LAKAVATE ++TF  +  S+LV K++GE   LV  +F++A+E APSIIFID
Sbjct:  149 PENKDYRA--KAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFID 270          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.408e-25
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFT--GKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            ++ E PNVKW D+ GLE  KQ L+EAV  P+K  + F   G R P +  LL+GPPGTGK+ LAKAVA E+ + F S+   ++ SKW+GESEK +  +F+ AR++AP IIF D
Sbjct:  442 VLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIGVRPP-KGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFD 552          

HSP 2 Score: 96.6709 bits (239), Expect = 1.622e-19
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  486 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            P+V + D+ GL+   + ++E + LP++ P+ F     +P +  LL GPPGTGK+ LAKAVA EA + F+ I+  +++SK++GE+E+ +  +F+ A ENAPSIIFID
Sbjct:  174 PDVTYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFID 279          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.518e-25
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  471 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR---QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            ++ E PNV W+D+ GLE  K+ ++E V LP+  P  F  KR   +P + FLLYGPPG GK+ LAKAVATE+++ F SI   +++SKW+GESEK +  +F+ A++ AP+I+F+D
Sbjct:  457 VMVEVPNVHWDDIGGLEDVKREIKETVELPLLKPDVF--KRLGIRPSKGFLLYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESEKAIREIFKKAKQVAPAIVFLD 567          

HSP 2 Score: 93.5893 bits (231), Expect = 1.373e-18
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 3
Query:  465 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            S ++ E   + + D+ GL      ++E + LP+K P+ F      P +  +LYGPPGTGK+ +A+AVA E+ + F SI+  +++SK+ G+SE+ +  +F  A E APSIIFID
Sbjct:  178 SEVLEEVSRISYEDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFID 290          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.418e-23
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  480 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E+PNV +ND+ GL+   Q L+EA+ LP+K P+ F      P +  LLYGPPG GK+ +AKA+A E ++TF  +  S+LV K++GE  +LV  LF++A+E AP+IIFID
Sbjct:  130 ERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFID 237          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.125e-23
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  480 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E+PNV +ND+ GL+   Q L+EA+ LP+K P+ F      P +  LLYGPPG GK+ +AKA+A E ++TF  +  S+LV K++GE  +LV  LF++A+E AP+IIFID
Sbjct:  133 ERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFID 240          
The following BLAST results are available for this feature:
BLAST of FC878025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 355
Match NameE-valueIdentityDescription
FIGL1_MOUSE1.370e-2650.00Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
FIGL1_RAT1.789e-2650.00Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
FIGL1_HUMAN1.789e-2650.00Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
SAV_SULAC3.986e-2650.00Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]
SPAST_BRUMA6.800e-2652.73Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
PSMR_METJA1.978e-2548.39Proteasome-activating nucleotidase OS=Methanocaldo... [more]
Y1156_METJA4.408e-2550.89Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
VAT_THEAC7.518e-2548.67VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]
PSMR_PYRFU2.418e-2349.07Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_PYRHO4.125e-2349.07Proteasome-activating nucleotidase OS=Pyrococcus h... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878025 ID=FC878025; Name=FC878025; organism=Citrus clementina; type=EST; length=801bp
CTCAAATTCGAAATCGAAATCTTTCAATTCACCCAAAAATCAAAATTAGT
AATTTCACATGCGATCCGATCATAAACCCTAACCAATAAATTTATAATTT
GAAGATGTACAGCAACTTCAAGGAACAGGCAATCGAGTACGTGAAACAAG
CCGTGCAAGAAGACAATGCTGGAAATTACGCAAAAGCCTTCCCTCTTTAC
ATGAACGCCTTGGAGTATTTCAAAACCCACTTGAAGTACGAGAAGAATCC
CAAGATTAAGGAGGCGATCACTCAGAAATTCACCGAGTATTTGCGCCGGG
CCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGGCCCGGCCCCGCTCAC
AACGGGGACGCTGCGGTGGCGACCCGGCCTAAGACGAAGCCGAAGGATGG
TGGTGATGGTGGCGGCGGTGATGGGGAGGATCCGGAGCAGGCGAAGCTGA
GGGCTGGATTGAATTCGGCGATTATTAGGGAGAAGCCTAATGTTAAGTGG
AATGACGTGGCGGGTTTAGAAAGCGCTAAGCAAGCTTTGCAGGAGGCTGT
GATTTTGCCGGTTAAGTTTCCCCAGTTTTTCACCGGTAAGAGACAACCGT
GGAGAGCATTTCTATTGTATGGACCACCTGGAACTGGAAAGTCATACCTG
GCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTATTTCTTC
ATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTTGTCTCAA
GCCTTTTCCAGATGGCTCGTGAAAATGCTCCTTCCATTATTTTTATTGAT
G
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