FC878025

Overview
NameFC878025
Unique NameFC878025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:166..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.125e-23
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  480 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E+PNV +ND+ GL+   Q L+EA+ LP+K P+ F      P +  LLYGPPG GK+ +AKA+A E ++TF  +  S+LV K++GE  +LV  LF++A+E AP+IIFID
Sbjct:  133 ERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFID 240          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: CDC48_ENCCU (Cell division control protein 48 OS=Encephalitozoon cuniculi GN=CDC48 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.125e-23
Identity = 53/108 (49.07%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  480 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQ-FFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            + PNVKW+D+ GLE  KQ L+E V  PV++P+ F      P +  L YGPPG GK+ LAKAVATE  + F SI   +L+S W+GESE  +  LF  AR  AP ++F D
Sbjct:  474 QSPNVKWSDIGGLEQVKQELRETVQYPVEYPEKFIKFGMTPAKGVLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGAAPCVLFFD 581          

HSP 2 Score: 81.6481 bits (200), Expect = 5.400e-15
Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  492 VKWNDVAGLESAKQALQEAVILPVKFPQFFT--GKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            V ++DV G  +    ++E V LP++  Q ++  G + P +  LLYGPPGTGK+ +A+A+A E  +  F I+  +++SK  GESE  +   F+ A +N+P+IIFID
Sbjct:  205 VGYDDVGGCRAQMAKIRELVELPLRHSQLYSKIGVKPP-KGILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFID 308          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.388e-23
Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  480 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E+P V +ND+ GLE   Q L+EA+ LP+K P+ F     +P +  LLYGPPG GK+ +AKAVA   ++TF  +  S+LV K++GE  +LV  LF++A+E AP+IIFID
Sbjct:  131 ERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFID 238          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.388e-23
Identity = 71/223 (31.84%), Postives = 105/223 (47.09%), Query Frame = 3
Query:  213 EYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNG-------DAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAI-------------------IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            +Y+K    Y +    K+ I  +   Y R    +R+ ++     P   G       D  V  +  T PK          E+  +   R  LN                      + EKP V + D+ GL+   + ++EAV LP+  P+ F     +P +  LLYGPPGTGK+ LAKAVA +  +TF  +  S+ V K++GE  +LV  +FQ+A+E APSIIFID
Sbjct:   19 DYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFID 241          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.037e-23
Identity = 54/110 (49.09%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  474 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            + E+P V + DV GLE   + + EAV+LP+K P  F      P +  LL+GPPGTGK+ LAKAVA E ++TF  +  S+LV+K++GE  +LV  +F++ARE APSI+FID
Sbjct:  130 VEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFID 239          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.190e-23
Identity = 52/108 (48.15%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  480 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            E+P V +ND+ GL+   Q L+EA+ LP+K P+ F     +P +  LLYGPPG GK+ +AKA+A E ++TF  +  S+LV K++GE  +LV  LF++A+E AP+IIFID
Sbjct:  132 ERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPAIIFID 239          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22
Identity = 54/110 (49.09%), Postives = 77/110 (70.00%), Query Frame = 3
Query:  474 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I EKPNV ++++ GLE   + L+E V LP+K P+ F     +P +  LLYGPPGTGK+ LAKAVATE+++ F  + +S+   K++GE  ++V  LF+MA+  APSIIFID
Sbjct:  125 IVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFID 234          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22
Identity = 54/110 (49.09%), Postives = 77/110 (70.00%), Query Frame = 3
Query:  474 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I EKPNV ++++ GLE   + L+E V LP+K P+ F     +P +  LLYGPPGTGK+ LAKAVATE+++ F  + +S+   K++GE  ++V  LF+MA+  APSIIFID
Sbjct:  125 IVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFID 234          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22
Identity = 54/110 (49.09%), Postives = 77/110 (70.00%), Query Frame = 3
Query:  474 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I EKPNV ++++ GLE   + L+E V LP+K P+ F     +P +  LLYGPPGTGK+ LAKAVATE+++ F  + +S+   K++GE  ++V  LF+MA+  APSIIFID
Sbjct:  125 IVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFID 234          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22
Identity = 54/110 (49.09%), Postives = 77/110 (70.00%), Query Frame = 3
Query:  474 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            I EKPNV ++++ GLE   + L+E V LP+K P+ F     +P +  LLYGPPGTGK+ LAKAVATE+++ F  + +S+   K++GE  ++V  LF+MA+  APSIIFID
Sbjct:  125 IVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFID 234          
The following BLAST results are available for this feature:
BLAST of FC878025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 355
Match NameE-valueIdentityDescription
PSMR_PYRAB4.125e-2349.07Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
CDC48_ENCCU4.125e-2349.07Cell division control protein 48 OS=Encephalitozoo... [more]
PSMR_PYRKO5.388e-2349.07Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_ARCFU5.388e-2331.84Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_AERPE7.037e-2349.09Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PSMR_THEON9.190e-2348.15Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_SULIY1.200e-2249.09Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN1.200e-2249.09Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM1.200e-2249.09Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL1.200e-2249.09Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878025 ID=FC878025; Name=FC878025; organism=Citrus clementina; type=EST; length=801bp
CTCAAATTCGAAATCGAAATCTTTCAATTCACCCAAAAATCAAAATTAGT
AATTTCACATGCGATCCGATCATAAACCCTAACCAATAAATTTATAATTT
GAAGATGTACAGCAACTTCAAGGAACAGGCAATCGAGTACGTGAAACAAG
CCGTGCAAGAAGACAATGCTGGAAATTACGCAAAAGCCTTCCCTCTTTAC
ATGAACGCCTTGGAGTATTTCAAAACCCACTTGAAGTACGAGAAGAATCC
CAAGATTAAGGAGGCGATCACTCAGAAATTCACCGAGTATTTGCGCCGGG
CCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGGCCCGGCCCCGCTCAC
AACGGGGACGCTGCGGTGGCGACCCGGCCTAAGACGAAGCCGAAGGATGG
TGGTGATGGTGGCGGCGGTGATGGGGAGGATCCGGAGCAGGCGAAGCTGA
GGGCTGGATTGAATTCGGCGATTATTAGGGAGAAGCCTAATGTTAAGTGG
AATGACGTGGCGGGTTTAGAAAGCGCTAAGCAAGCTTTGCAGGAGGCTGT
GATTTTGCCGGTTAAGTTTCCCCAGTTTTTCACCGGTAAGAGACAACCGT
GGAGAGCATTTCTATTGTATGGACCACCTGGAACTGGAAAGTCATACCTG
GCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTATTTCTTC
ATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTTGTCTCAA
GCCTTTTCCAGATGGCTCGTGAAAATGCTCCTTCCATTATTTTTATTGAT
G
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