FC878029

Overview
NameFC878029
Unique NameFC878029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_ASPTN (Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.535e-27
Identity = 54/103 (52.43%), Postives = 77/103 (74.76%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            ++QPS +  K+++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ +   G+ ++R+ +R+
Sbjct:  808 ISQPSMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKILRK 910          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_SCLS1 (Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.617e-27
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            + QP  +Q ++++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E  GI GP +VVAP STL NW  EI +F P L+ +   G   +R+ +R+
Sbjct:  831 IEQPKMLQAQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEKHGIWGPFLVVAPASTLHNWQQEITKFVPRLKVLPYWGTAADRKVLRK 933          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_SCHPO (Putative DNA helicase ino80 OS=Schizosaccharomyces pombe GN=ino80 PE=1 SV=4)

HSP 1 Score: 121.324 bits (303), Expect = 7.875e-27
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 2
Query:  566 LSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            L N   V QP  +  K+++YQL GLNWL  LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI RF P L+ +   G+ ++R+ +R+
Sbjct:  826 LVNAFEVKQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRK 934          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_ASPOR (Putative DNA helicase ino80 OS=Aspergillus oryzae GN=ino80 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.875e-27
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            ++QP+ +  K+++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ +   G+ ++R+ +R+
Sbjct:  623 ISQPTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKILRK 725          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_ASPNC (Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ino80 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.875e-27
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            ++QP+ +  K+++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ +   G+ ++R+ +R+
Sbjct:  813 ISQPNMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKILRK 915          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_ASPCL (Putative DNA helicase ino80 OS=Aspergillus clavatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.875e-27
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            ++QP+ +  K+++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ +   G+ ++R+ +R+
Sbjct:  825 ISQPNMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKVLRK 927          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.029e-26
Identity = 53/103 (51.46%), Postives = 76/103 (73.79%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            ++QP  +  K+++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ +   G+ ++R+ +R+
Sbjct:  823 ISQPKMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKVLRK 925          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_ASPFU (Putative DNA helicase ino80 OS=Aspergillus fumigatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.029e-26
Identity = 53/103 (51.46%), Postives = 76/103 (73.79%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            ++QP  +  K+++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ +   G+ ++R+ +R+
Sbjct:  823 ISQPKMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKVLRK 925          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_MAGGR (Putative DNA helicase INO80 OS=Magnaporthe grisea GN=INO80 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.343e-26
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            + QP  +   +++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +VVAP STL NW  EI+RF P L+ V   G+  +R+ +R+
Sbjct: 1068 IEQPKLLTATLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEHHDIWGPFLVVAPASTLHNWEQEIKRFVPDLKIVPYWGSASDRKILRK 1170          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_USTMA (Putative DNA helicase INO80 OS=Ustilago maydis GN=INO80 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.754e-26
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            + QP  +  ++++YQL GLNWL  LYE GINGILADEMGLGKT+Q+ISL+ YL E   I GP +V+AP STL NW  EI +F P L+A+   GN ++R  +R+
Sbjct:  988 IKQPKMLTCQLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISLMAYLAEVHDIWGPFLVIAPASTLHNWQQEISKFVPTLKALPYWGNVKDRAVLRK 1090          
The following BLAST results are available for this feature:
BLAST of FC878029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
INO80_ASPTN3.535e-2752.43Putative DNA helicase ino80 OS=Aspergillus terreus... [more]
INO80_SCLS14.617e-2754.37Putative DNA helicase INO80 OS=Sclerotinia sclerot... [more]
INO80_SCHPO7.875e-2753.21Putative DNA helicase ino80 OS=Schizosaccharomyces... [more]
INO80_ASPOR7.875e-2751.46Putative DNA helicase ino80 OS=Aspergillus oryzae ... [more]
INO80_ASPNC7.875e-2751.46Putative DNA helicase ino80 OS=Aspergillus niger (... [more]
INO80_ASPCL7.875e-2751.46Putative DNA helicase ino80 OS=Aspergillus clavatu... [more]
INO80_NEOFI1.029e-2651.46Putative DNA helicase ino80 OS=Neosartorya fischer... [more]
INO80_ASPFU1.029e-2651.46Putative DNA helicase ino80 OS=Aspergillus fumigat... [more]
INO80_MAGGR1.343e-2654.37Putative DNA helicase INO80 OS=Magnaporthe grisea ... [more]
INO80_USTMA1.754e-2654.37Putative DNA helicase INO80 OS=Ustilago maydis GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878029 ID=FC878029; Name=FC878029; organism=Citrus clementina; type=EST; length=938bp
AAAAAAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCTA
AACCCTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCC
AGTTCGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGA
GGAGGAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACG
ATAACTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTT
GAAGAGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAA
GCAGAGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAAC
TATTGGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGG
AAGGGCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTT
TGCGAAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGAC
GCCATGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAG
GAAGAAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTG
TATTCAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTA
TACGGTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGT
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAAGTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGGAAGTTTGATGTCTGTGTAACAAGTTTT
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