FC878029
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 2.993e-26 Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 2 Query: 584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIR 889 + QP+ GK++ YQL G+NWL LYE GINGILADEMGLGKT+Q+I+LL +L E I GP ++++P STL NW E RF P + + GNP +R+ IR Sbjct: 510 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIR 611
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 2.993e-26 Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 2 Query: 584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIR 889 + QP+ GK++ YQL G+NWL LYE GINGILADEMGLGKT+Q+I+LL +L E I GP ++++P STL NW E RF P + + GNP +R+ IR Sbjct: 508 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIR 609
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 3.908e-26 Identity = 68/185 (36.76%), Postives = 97/185 (52.43%), Query Frame = 2 Query: 407 RLKYLLQQTELFSHFAKGDQSASQK-------------KAKGRGRHA------SKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLV 904 R ++LL + LF HF + + K KG+G+H ++ D + P+ + G++R YQ+ G+NWL+ L++N I GILADEMGLGKTLQTIS LGYL I GP +V+APKSTL NW+ EI R+ P + A + G+ EER + + L+ Sbjct: 108 RFEHLLSLSGLFKHFIESKAAKDPKFRQVLDVLEENKANGKGKGKHQDVRRRKTEHEEDAELLKEEDSDDDESIEFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLL 292
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 5.105e-26 Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 2 Query: 584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 V+QP + ++++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E I GP +VVAP STL NW EI +F P L+ + G+ ++R+ +R+ Sbjct: 786 VSQPKMLTCQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHNWQQEIVKFVPDLKVLPYWGSAKDRKVLRK 888
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.707e-26 Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = 2 Query: 590 QPSC-IQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913 QPS + G ++DYQ+ GL W++ L+ N +NGILADEMGLGKT+QTISLL YL+E + I GP++V+ P STL NW +E ++ P LR + G+P ER+ ++ + AGE Sbjct: 758 QPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERK-AKQAKIRAGE 865
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 8.707e-26 Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 2 Query: 584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 ++QP ++ +++YQ+ GLNWL LYE GINGILADEMGLGKT+Q+IS+L YL E I GP +VV P STL NW EI RF P + + GN ++R+ +R+ Sbjct: 557 ISQPDLLKCTLKEYQVKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETHNIWGPFLVVTPASTLHNWQQEISRFVPEFKVIPYWGNAKDRKVLRK 659
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae GN=INO80 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.485e-25 Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 2 Query: 584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 + QP I ++++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E I GP +VVAP STL NW EI +F P + + G +R+ +R+ Sbjct: 1035 IEQPKLINAQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHNWQQEIAKFVPEFKILPYWGGASDRKVLRK 1137
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 1.940e-25 Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 2 Query: 575 TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENL 898 T V P +G +++YQ+ GL WL+ YE G+NGILADEMGLGKT+Q ++ L +L E + I GP +VVAP S L NW +EI RFCP L+ + G +ER +R+N+ Sbjct: 573 TSTVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNI 680
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.533e-25 Identity = 72/191 (37.70%), Postives = 99/191 (51.83%), Query Frame = 2 Query: 407 RLKYLLQQTELFSHF----AKGDQ----------------SASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSNTR----LVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLV 904 R KYLL T+LF HF AK D+ S S RH K + + + + PS ++ GK+RDYQ+ GLNWLI L+EN ++GILADEMGLGKTLQTIS LGYL + I GP +++ PKSTL NW E ++ P + + + G+ + R I N+++ Sbjct: 90 RFKYLLGVTDLFRHFIGIKAKHDKNIQKLLKQLDSDANKLSKSHSTVSSSSRHHRKTEKEEDAELMADEEEEIVDTYQEDIFVSESPSFVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIIL 280
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.533e-25 Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 2 Query: 566 LSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEER 877 + L P I+ +RDYQ AGL+WL+ LY+N INGILADEMGLGKTLQ ISLL YL + I GPH+V+ P S L NW E++RFCP + + GN ER Sbjct: 646 MDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNER 749 The following BLAST results are available for this feature:
BLAST of FC878029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878029 ID=FC878029; Name=FC878029; organism=Citrus clementina; type=EST; length=938bpback to top |