FC878029

Overview
NameFC878029
Unique NameFC878029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.993e-26
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIR 889
            + QP+   GK++ YQL G+NWL  LYE GINGILADEMGLGKT+Q+I+LL +L E   I GP ++++P STL NW  E  RF P  + +   GNP +R+ IR
Sbjct:  510 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIR 611          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.993e-26
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIR 889
            + QP+   GK++ YQL G+NWL  LYE GINGILADEMGLGKT+Q+I+LL +L E   I GP ++++P STL NW  E  RF P  + +   GNP +R+ IR
Sbjct:  508 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIR 609          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.908e-26
Identity = 68/185 (36.76%), Postives = 97/185 (52.43%), Query Frame = 2
Query:  407 RLKYLLQQTELFSHFAKGDQSASQK-------------KAKGRGRHA------SKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLV 904
            R ++LL  + LF HF +   +   K               KG+G+H       ++               D     +    P+ + G++R YQ+ G+NWL+ L++N I GILADEMGLGKTLQTIS LGYL     I GP +V+APKSTL NW+ EI R+ P + A  + G+ EER  + +  L+
Sbjct:  108 RFEHLLSLSGLFKHFIESKAAKDPKFRQVLDVLEENKANGKGKGKHQDVRRRKTEHEEDAELLKEEDSDDDESIEFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLL 292          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.105e-26
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            V+QP  +  ++++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +VVAP STL NW  EI +F P L+ +   G+ ++R+ +R+
Sbjct:  786 VSQPKMLTCQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHNWQQEIVKFVPDLKVLPYWGSAKDRKVLRK 888          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.707e-26
Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = 2
Query:  590 QPSC-IQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913
            QPS  + G ++DYQ+ GL W++ L+ N +NGILADEMGLGKT+QTISLL YL+E + I GP++V+ P STL NW +E  ++ P LR +   G+P ER+  ++  + AGE
Sbjct:  758 QPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERK-AKQAKIRAGE 865          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.707e-26
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            ++QP  ++  +++YQ+ GLNWL  LYE GINGILADEMGLGKT+Q+IS+L YL E   I GP +VV P STL NW  EI RF P  + +   GN ++R+ +R+
Sbjct:  557 ISQPDLLKCTLKEYQVKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETHNIWGPFLVVTPASTLHNWQQEISRFVPEFKVIPYWGNAKDRKVLRK 659          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae GN=INO80 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.485e-25
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            + QP  I  ++++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +VVAP STL NW  EI +F P  + +   G   +R+ +R+
Sbjct: 1035 IEQPKLINAQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHNWQQEIAKFVPEFKILPYWGGASDRKVLRK 1137          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.940e-25
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 2
Query:  575 TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENL 898
            T  V  P   +G +++YQ+ GL WL+  YE G+NGILADEMGLGKT+Q ++ L +L E + I GP +VVAP S L NW +EI RFCP L+ +   G  +ER  +R+N+
Sbjct:  573 TSTVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNI 680          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.533e-25
Identity = 72/191 (37.70%), Postives = 99/191 (51.83%), Query Frame = 2
Query:  407 RLKYLLQQTELFSHF----AKGDQ----------------SASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSNTR----LVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLV 904
            R KYLL  T+LF HF    AK D+                S S        RH  K               + +   +    +   PS ++ GK+RDYQ+ GLNWLI L+EN ++GILADEMGLGKTLQTIS LGYL   + I GP +++ PKSTL NW  E  ++ P +  + + G+ + R  I  N+++
Sbjct:   90 RFKYLLGVTDLFRHFIGIKAKHDKNIQKLLKQLDSDANKLSKSHSTVSSSSRHHRKTEKEEDAELMADEEEEIVDTYQEDIFVSESPSFVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIIL 280          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.533e-25
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 2
Query:  566 LSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEER 877
            +    L   P  I+  +RDYQ AGL+WL+ LY+N INGILADEMGLGKTLQ ISLL YL  +  I GPH+V+ P S L NW  E++RFCP  + +   GN  ER
Sbjct:  646 MDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNER 749          
The following BLAST results are available for this feature:
BLAST of FC878029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
INO80_MOUSE2.993e-2652.94Putative DNA helicase INO80 complex homolog 1 OS=M... [more]
INO80_HUMAN2.993e-2652.94Putative DNA helicase INO80 complex homolog 1 OS=H... [more]
ISW1_YEAST3.908e-2636.76ISWI chromatin-remodeling complex ATPase ISW1 OS=S... [more]
INO80_COCIM5.105e-2653.40Putative DNA helicase INO80 OS=Coccidioides immiti... [more]
SNF2_YEAST8.707e-2650.46Transcription regulatory protein SNF2 OS=Saccharom... [more]
INO80_DEBHA8.707e-2652.43Putative DNA helicase INO80 OS=Debaryomyces hansen... [more]
INO80_GIBZE1.485e-2552.43Putative DNA helicase INO80 OS=Gibberella zeae GN=... [more]
INO80_ARATH1.940e-2549.07DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
ISW2_YEAST2.533e-2537.70ISWI chromatin-remodeling complex ATPase ISW2 OS=S... [more]
HEPF1_PLAF72.533e-2553.85Probable ATP-dependent helicase PF08_0048 OS=Plasm... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878029 ID=FC878029; Name=FC878029; organism=Citrus clementina; type=EST; length=938bp
AAAAAAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCTA
AACCCTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCC
AGTTCGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGA
GGAGGAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACG
ATAACTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTT
GAAGAGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAA
GCAGAGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAAC
TATTGGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGG
AAGGGCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTT
TGCGAAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGAC
GCCATGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAG
GAAGAAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTG
TATTCAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTA
TACGGTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGT
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAAGTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGGAAGTTTGATGTCTGTGTAACAAGTTTT
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