FC878029

Overview
NameFC878029
Unique NameFC878029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10484 contig Ccv1_Contig10484:1..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.778e-24
Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 2
Query:  569 SNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            S  R V  P  ++G +R YQ  GLNWL  LY NG NGILADEMGLGKT+QTISLL YL     I GPH++V P S + NW  E ++F P  + +   G+P++R   R+
Sbjct:  766 SKVRDVPLPPLLRGTLRPYQKQGLNWLASLYNNGTNGILADEMGLGKTIQTISLLAYLAAEHHIWGPHLIVVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRK 873          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.778e-24
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            V  PS ++G +R YQ  GLNWL  LY N  NGILADEMGLGKT+QTISLL YL   +   GPH++V P S L NW  E +RF P  + +   GNP++R+  R+
Sbjct:  618 VPTPSLLRGTLRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLSYLACEKHNWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGNPQQRKEKRK 720          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.240e-24
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 2
Query:  575 TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIR 889
            TRL  QP  ++G++R YQ  G  WL  LY NG+NGILADEMGLGKT+QTISLL +L   +G+ GPH+VVAP S + NW  E ++F P  + +   GN +ER+  R
Sbjct:  978 TRL-RQPFLLRGQLRPYQQIGFEWLCSLYANGVNGILADEMGLGKTIQTISLLAHLACDKGVWGPHLVVAPTSVMLNWEVEFKKFLPGFKILSYYGNQKERKEKR 1081          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.390e-23
Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  593 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIR 889
            P  ++G +R+YQ  GL+WL  LY N INGILADEMGLGKT+QTI+LL +L    G+ GPH+VV P S + NW  E +++CP  + +   GN EERR  R
Sbjct:  776 PHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKR 874          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 1.390e-23
Identity = 51/110 (46.36%), Postives = 75/110 (68.18%), Query Frame = 2
Query:  566 LSNTRLVTQ-PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            L  T++ T  P  I+G++R+YQ+ GL+W++ LYE  +NGILADEMGLGKT+QTISLL ++     I GPH++V P S + NW  E +++CP L+ +   G  +ER   R+
Sbjct:  541 LETTQVKTPVPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRK 650          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.390e-23
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 2
Query:  572 NTRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEER 877
            N  +V QPS +Q G +RDYQL GL W++ LY N +NGILADEMGLGKT+Q ++L+ YL EF+G  GPH+++ P + L NW +E+  + P +  +  +G  ++R
Sbjct:  966 NEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQR 1068          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.371e-23
Identity = 50/107 (46.73%), Postives = 74/107 (69.16%), Query Frame = 2
Query:  584 VTQPSCIQGKM--RDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENL 898
            + QPS +   +  + YQ  GLNWL  ++++G+NGILADEMGLGKT+Q I+ L YL++  G  GPH++V P ST+ NW+ E+  +CP L+ +   G+ EER+ IR N+
Sbjct:  485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNI 590          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.097e-23
Identity = 53/103 (51.46%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            V  PS ++G +R YQ  GLNWL  LY N  NGILADEMGLGKT+QTISLL YL   +   GPH++V P S L NW  E +RF P  + +   G+P++R+  R+
Sbjct:  686 VPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRK 788          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.097e-23
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            V  PS ++G +R YQ  GLNWL  LY N  NGILADEMGLGKT+QTISLL YL   +   GPH++V P S L NW  E +RF P  + +   G+P++RR  R+
Sbjct:  755 VPVPSLLRGTLRIYQKQGLNWLASLYNNKTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRREKRK 857          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.899e-23
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 2
Query:  590 QPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            QP   +G ++ YQ+ G+ WL  +Y+ GI+GILADEMGLGKT+Q+I+ L ++ E  G+ GP +V++P STL NW  E+ RF P  + V   G+P ER+ +R+
Sbjct:  527 QPKMFKGTLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAERKILRQ 627          
The following BLAST results are available for this feature:
BLAST of FC878029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
SWR1_DEBHA4.778e-2450.00Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=... [more]
SWR1_CANGA4.778e-2452.43Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=... [more]
SWR1_USTMA6.240e-2452.38Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1[more]
SWR1_EMENI1.390e-2352.53Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 ... [more]
SSL1_CAEEL1.390e-2346.36Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 ... [more]
BRM_ARATH1.390e-2347.57ATP-dependent helicase BRM OS=Arabidopsis thaliana... [more]
SMRCD_HUMAN2.371e-2346.73SWI/SNF-related matrix-associated actin-dependent ... [more]
SWR1_YEAST3.097e-2351.46Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 ... [more]
SWR1_KLULA3.097e-2352.43Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3... [more]
INO80_DROME6.899e-2346.53Putative DNA helicase Ino80 OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878029 ID=FC878029; Name=FC878029; organism=Citrus clementina; type=EST; length=938bp
AAAAAAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCTA
AACCCTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCC
AGTTCGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGA
GGAGGAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACG
ATAACTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTT
GAAGAGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAA
GCAGAGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAAC
TATTGGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGG
AAGGGCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTT
TGCGAAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGAC
GCCATGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAG
GAAGAAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTG
TATTCAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTA
TACGGTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGT
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAAGTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGGAAGTTTGATGTCTGTGTAACAAGTTTT
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