FC878029
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 4.778e-24 Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 2 Query: 569 SNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 S R V P ++G +R YQ GLNWL LY NG NGILADEMGLGKT+QTISLL YL I GPH++V P S + NW E ++F P + + G+P++R R+ Sbjct: 766 SKVRDVPLPPLLRGTLRPYQKQGLNWLASLYNNGTNGILADEMGLGKTIQTISLLAYLAAEHHIWGPHLIVVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRK 873
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.778e-24 Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 V PS ++G +R YQ GLNWL LY N NGILADEMGLGKT+QTISLL YL + GPH++V P S L NW E +RF P + + GNP++R+ R+ Sbjct: 618 VPTPSLLRGTLRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLSYLACEKHNWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGNPQQRKEKRK 720
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 6.240e-24 Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 2 Query: 575 TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIR 889 TRL QP ++G++R YQ G WL LY NG+NGILADEMGLGKT+QTISLL +L +G+ GPH+VVAP S + NW E ++F P + + GN +ER+ R Sbjct: 978 TRL-RQPFLLRGQLRPYQQIGFEWLCSLYANGVNGILADEMGLGKTIQTISLLAHLACDKGVWGPHLVVAPTSVMLNWEVEFKKFLPGFKILSYYGNQKERKEKR 1081
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.390e-23 Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 2 Query: 593 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIR 889 P ++G +R+YQ GL+WL LY N INGILADEMGLGKT+QTI+LL +L G+ GPH+VV P S + NW E +++CP + + GN EERR R Sbjct: 776 PHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKR 874
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4) HSP 1 Score: 110.538 bits (275), Expect = 1.390e-23 Identity = 51/110 (46.36%), Postives = 75/110 (68.18%), Query Frame = 2 Query: 566 LSNTRLVTQ-PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 L T++ T P I+G++R+YQ+ GL+W++ LYE +NGILADEMGLGKT+QTISLL ++ I GPH++V P S + NW E +++CP L+ + G +ER R+ Sbjct: 541 LETTQVKTPVPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRK 650
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.390e-23 Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 2 Query: 572 NTRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEER 877 N +V QPS +Q G +RDYQL GL W++ LY N +NGILADEMGLGKT+Q ++L+ YL EF+G GPH+++ P + L NW +E+ + P + + +G ++R Sbjct: 966 NEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQR 1068
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.371e-23 Identity = 50/107 (46.73%), Postives = 74/107 (69.16%), Query Frame = 2 Query: 584 VTQPSCIQGKM--RDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENL 898 + QPS + + + YQ GLNWL ++++G+NGILADEMGLGKT+Q I+ L YL++ G GPH++V P ST+ NW+ E+ +CP L+ + G+ EER+ IR N+ Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNI 590
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.097e-23 Identity = 53/103 (51.46%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 V PS ++G +R YQ GLNWL LY N NGILADEMGLGKT+QTISLL YL + GPH++V P S L NW E +RF P + + G+P++R+ R+ Sbjct: 686 VPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRK 788
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.097e-23 Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 V PS ++G +R YQ GLNWL LY N NGILADEMGLGKT+QTISLL YL + GPH++V P S L NW E +RF P + + G+P++RR R+ Sbjct: 755 VPVPSLLRGTLRIYQKQGLNWLASLYNNKTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRREKRK 857
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 6.899e-23 Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 2 Query: 590 QPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 QP +G ++ YQ+ G+ WL +Y+ GI+GILADEMGLGKT+Q+I+ L ++ E G+ GP +V++P STL NW E+ RF P + V G+P ER+ +R+ Sbjct: 527 QPKMFKGTLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAERKILRQ 627 The following BLAST results are available for this feature:
BLAST of FC878029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878029 ID=FC878029; Name=FC878029; organism=Citrus clementina; type=EST; length=938bpback to top |