FC878031

Overview
NameFC878031
Unique NameFC878031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878031_ssr123 microsatellite FC878031_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878031_ssr630 microsatellite FC878031_ssr630:630..641. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878031_ssr671 microsatellite FC878031_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3333 contig Ccv1_Contig3333:56..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.593e-48
Identity = 93/181 (51.38%), Postives = 125/181 (69.06%), Query Frame = 3
Query:   39 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAA 581
            K VV+DA+ H+LGRLASV+AK+LL GQKVVVVRCEE+ ISG   R K+KY+ +LRK     PS G  HFRAP++I  + +RGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRLSSEVGW Y D + +LE++RK ++   Y+ +    K    A++A+
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAKLAKQKKIASAKEAS 186          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 2.427e-46
Identity = 91/181 (50.28%), Postives = 120/181 (66.30%), Query Frame = 3
Query:   45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEE 587
            VV+DA+ H+LGRLAS +AK++LNGQK+VVVR E + ISG   R K+KY  FLRK      + GP HFRAP++IL++ IRGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+LS+ VGW Y D + +LE KRK R+   Y +++   K    A  AA E
Sbjct:    6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASE 186          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.222e-46
Identity = 85/167 (50.90%), Postives = 117/167 (70.06%), Query Frame = 3
Query:   39 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERR 539
            K V++DA+ H++GRLAS +AK+LL GQKVVVVRCEE+ ISG   R K+KY+ +LRK     PS G  HFRAP++I  + +RGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+   KYC +GRLSSEVGW Y + + +LE++RK ++   Y+ +
Sbjct:    6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAK 172          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.683e-45
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = 3
Query:   39 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEK 575
            K +V+D + H+LGRLASV+AK LL+GQK+VVVRCEE+ ISG L R K+K+  FL   MNT  + G  H R+P+KI WR +RGM+PHKT            +EGVPAPYDK KR+V+P AL+V++L    KY +L RLS EVGW Y   + +LE +RK+R+   Y +   +   R +A K
Sbjct:    5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALK 183          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 4.577e-45
Identity = 88/181 (48.62%), Postives = 118/181 (65.19%), Query Frame = 3
Query:   45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEE 587
            VV+D + H++GRLASV+AK+LLNGQK+VVVR EE+ ISG   R K+KY  FLRK      + GP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+LS+ VGW Y D + +LE KRK  +   Y +++   K    A   A E
Sbjct:    7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAE 187          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.839e-41
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 3
Query:   45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRL 449
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL
Sbjct:    3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.634e-19
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  285 MIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEK 575
            M+ HKT            ++G+P PYDK KRMV+P ALKV+RL+   K+ LLGR + EV W Y      LE+KRKE+A++ Y ++KQL +LR +AEK
Sbjct:    1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHYWKKKQLMRLRKQAEK 97          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.457e-14
Identity = 54/143 (37.76%), Postives = 78/143 (54.55%), Query Frame = 3
Query:   39 KRVVVDARHHMLGRLASVLAKELLNG-QKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 464
            K  V+DA+  +LGRLAS +AK+LL+G +KV ++  E+  ISG       +Y R  R+R  T+   GP   + P +IL RTIRGM+P+K             Y GVP      + + IPDA   +RL    +Y  LG +S ++G
Sbjct:    3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMG 140          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.216e-13
Identity = 60/202 (29.70%), Postives = 101/202 (50.00%), Query Frame = 3
Query:   45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY----YDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQ---LEIIAPIK 626
            ++++   H+LGRLASV++K+LL G++V+V+  E+I I+G       KY + + +   + P   GP + R P  I  RT+RGM+P+K             Y G+P  +   + + IPDA K   ++KG +   LG +S  +G           K +    K +  +A    ++  K RV+  K   E   P+   L+I+ P+K
Sbjct:    4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKGME---LGEISELLGARLQIGSVIMKKVIHTSGKRKTAIARGTIRE-GKGRVRINKVPVELYTPELARLKIMEPLK 200          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.216e-13
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   48 VVDARHHMLGRLASVLAKELLNG-QKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 464
            V+DA   +LGRLAS +AK+LL+G +++ +V  E+  ISG       +Y R  R+R +T+   GP   + P +IL RTIRGM+P+K             Y GVP     T+ + I DA   +RL    KY  LG +S ++G
Sbjct:    3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY-RETRERGSTE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMG 137          
The following BLAST results are available for this feature:
BLAST of FC878031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RL16B_SCHPO2.593e-4851.3860S ribosomal protein L16-B OS=Schizosaccharomyces... [more]
RL16B_YEAST2.427e-4650.2860S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RL16C_SCHPO9.222e-4650.9060S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL13A_DICDI2.683e-4549.7260S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL16A_YEAST4.577e-4548.6260S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL13A_PIG6.839e-4158.5260S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
R13AX_HUMAN5.634e-1947.42Putative 60S ribosomal protein L13a-like MGC87657 ... [more]
RL13_METAC5.457e-1437.7650S ribosomal protein L13P OS=Methanosarcina aceti... [more]
RLSX_METTH1.216e-1329.70Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RL13_METBF1.216e-1337.8650S ribosomal protein L13P OS=Methanosarcina barke... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878031 ID=FC878031; Name=FC878031; organism=Citrus clementina; type=EST; length=893bp
TTTGCACGAAAATGGTGTCAGGTTCAGGGATCTGCGCGAAAAGAGTGGTG
GTGGACGCCAGGCACCACATGCTCGGCCGCCTTGCCTCCGTTTTGGCCAA
GGAGCTCTTGAACGGCCAGAAGGTCGTCGTCGTCCGGTGCGAGGAGATTT
GTATATCAGGTGGGCTTGTTAGGCAGAAGATGAAGTACATGAGGTTCTTG
AGAAAGAGGATGAACACTAAGCCTTCTCATGGTCCCATCCATTTTCGAGC
TCCTGCTAAGATCCTTTGGCGTACCATCCGTGGGATGATTCCCCACAAGA
CTAAGCGTGGAGCTGCAGCCCTTGCTCGTTTGAAGGCTTATGAAGGAGTT
CCTGCTCCATATGACAAGACAAAGAGGATGGTCATTCCTGATGCTCTCAA
GGTCTTGAGGCTTCAAAAAGGACACAAGTACTGCTTGTTGGGCAGGCTTT
CATCTGAAGTAGGATGGAACTATTATGACACCATTAAGGAGCTTGAGAAG
AAGAGAAAGGAGAGGGCCCAGGTAGCTTATGAGAGGAGGAAGCAGTTGGC
TAAATTGAGGGTCAAAGCTGAGAAGGCTGCCGAGGAGAGGCTTGGTCCCC
AGCTAGAAATCATTGCTCCCATCAAGTATTGATGATGATGATTCTAGAAA
TCATTGCTCCCATCAAGTATTGATGATGATGATTCGTAAAGAGTTTGTTT
TCCAAATGTTACATCTGAGAAGAGTTTGTTCCCATTATATTTTGTCTTCC
ATTTTGATATTGATGGATTATAGTTTAACTGTGGTAGTTTTGAAGTAGAT
GTTATGCTGTATGCAAACATACTTGTTGAAATTAGTTATTTTGGTTATCA
ATTTGCTCAATTTCATCACAAAGCTGAGATTATGTACTGTCTT
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