FC878031
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.593e-48 Identity = 93/181 (51.38%), Postives = 125/181 (69.06%), Query Frame = 3 Query: 39 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAA 581 K VV+DA+ H+LGRLASV+AK+LL GQKVVVVRCEE+ ISG R K+KY+ +LRK PS G HFRAP++I + +RGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRLSSEVGW Y D + +LE++RK ++ Y+ + K A++A+ Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAKLAKQKKIASAKEAS 186
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3) HSP 1 Score: 186.037 bits (471), Expect = 2.427e-46 Identity = 91/181 (50.28%), Postives = 120/181 (66.30%), Query Frame = 3 Query: 45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEE 587 VV+DA+ H+LGRLAS +AK++LNGQK+VVVR E + ISG R K+KY FLRK + GP HFRAP++IL++ IRGM+ HKT +EG+P PYDK KR+V+P AL+VLRL+ G KY LG+LS+ VGW Y D + +LE KRK R+ Y +++ K A AA E Sbjct: 6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASE 186
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.222e-46 Identity = 85/167 (50.90%), Postives = 117/167 (70.06%), Query Frame = 3 Query: 39 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERR 539 K V++DA+ H++GRLAS +AK+LL GQKVVVVRCEE+ ISG R K+KY+ +LRK PS G HFRAP++I + +RGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ KYC +GRLSSEVGW Y + + +LE++RK ++ Y+ + Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAK 172
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.683e-45 Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = 3 Query: 39 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEK 575 K +V+D + H+LGRLASV+AK LL+GQK+VVVRCEE+ ISG L R K+K+ FL MNT + G H R+P+KI WR +RGM+PHKT +EGVPAPYDK KR+V+P AL+V++L KY +L RLS EVGW Y + +LE +RK+R+ Y + + R +A K Sbjct: 5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALK 183
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3) HSP 1 Score: 181.8 bits (460), Expect = 4.577e-45 Identity = 88/181 (48.62%), Postives = 118/181 (65.19%), Query Frame = 3 Query: 45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEE 587 VV+D + H++GRLASV+AK+LLNGQK+VVVR EE+ ISG R K+KY FLRK + GP HFRAP++I ++ +RGM+ HKT +EG+P PYDK KR+V+P AL+VLRL+ G KY LG+LS+ VGW Y D + +LE KRK + Y +++ K A A E Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAE 187
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 6.839e-41 Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 3 Query: 45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRL 449 +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT ++G+P PYDK KRMV+P ALKV+RL+ K+ LGRL Sbjct: 3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.634e-19 Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 3 Query: 285 MIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEK 575 M+ HKT ++G+P PYDK KRMV+P ALKV+RL+ K+ LLGR + EV W Y LE+KRKE+A++ Y ++KQL +LR +AEK Sbjct: 1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHYWKKKQLMRLRKQAEK 97
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.457e-14 Identity = 54/143 (37.76%), Postives = 78/143 (54.55%), Query Frame = 3 Query: 39 KRVVVDARHHMLGRLASVLAKELLNG-QKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 464 K V+DA+ +LGRLAS +AK+LL+G +KV ++ E+ ISG +Y R R+R T+ GP + P +IL RTIRGM+P+K Y GVP + + IPDA +RL +Y LG +S ++G Sbjct: 3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMG 140
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.216e-13 Identity = 60/202 (29.70%), Postives = 101/202 (50.00%), Query Frame = 3 Query: 45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY----YDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQ---LEIIAPIK 626 ++++ H+LGRLASV++K+LL G++V+V+ E+I I+G KY + + + + P GP + R P I RT+RGM+P+K Y G+P + + + IPDA K ++KG + LG +S +G K + K + +A ++ K RV+ K E P+ L+I+ P+K Sbjct: 4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKGME---LGEISELLGARLQIGSVIMKKVIHTSGKRKTAIARGTIRE-GKGRVRINKVPVELYTPELARLKIMEPLK 200
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.216e-13 Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 3 Query: 48 VVDARHHMLGRLASVLAKELLNG-QKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 464 V+DA +LGRLAS +AK+LL+G +++ +V E+ ISG +Y R R+R +T+ GP + P +IL RTIRGM+P+K Y GVP T+ + I DA +RL KY LG +S ++G Sbjct: 3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY-RETRERGSTE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMG 137 The following BLAST results are available for this feature:
BLAST of FC878031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878031 ID=FC878031; Name=FC878031; organism=Citrus clementina; type=EST; length=893bpback to top |