FC878031

Overview
NameFC878031
Unique NameFC878031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878031_ssr123 microsatellite FC878031_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878031_ssr630 microsatellite FC878031_ssr630:630..641. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878031_ssr671 microsatellite FC878031_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3333 contig Ccv1_Contig3333:56..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.074e-13
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 3
Query:   48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGW 467
            V+DA  H+LGRL+S +AK LLNG+++VVV  E+  I+G    + M + R+  K        GP   R P +I  RT+RGM+P K+            + GVP      +   I DAL + ++ K  KY  L  +S  +G+
Sbjct:   18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGF 153          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.344e-12
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 3
Query:   48 VVDARHHMLGRLASVLAKELLNG-QKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 464
            V+DA+  +LGRLAS +AK+LL+G +KV ++  E+  ISG       +Y R  R R  T+   GP   + P +IL RTIRGM+P+K             Y GVP      +   I DA   +RL   +KY  LG +S ++G
Sbjct:    3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMG 137          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 3
Query:   48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 473
            +++A   +LGRLAS +AK LL G++VV+V  E+  I+G       KY +    R  T P  GP + +   +I+ RT+RGM+P KT            Y GVP  ++  +   I +A  + RL    KY  +G ++  +G  +
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPRRGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEA-HMSRLAT-PKYVTVGEVAKFLGGKF 142          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 3
Query:   48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQK-GHK-YCLLGRLSSEVGW 467
            V+DA + +LGRLASV+AK +L G+++ V+  E+  I+G   ++      +L+K     P  GP + R P  I  R +RGM+P KT            Y G P   ++    + P+ +    + + GH  Y  LG LS E+G+
Sbjct:   17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAEADMSRLGHLWYVTLGELSEELGY 153          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11
Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 3
Query:   48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 473
            +++A   +LGRLAS +AK LL G++VV+V  E+  I+G       KY +    R  T P  GP + +   +I+ RTIRGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G ++  +G  +
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METBU (50S ribosomal protein L13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11
Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 464
            V+DA   ++GRLAS +AK LL+G++V +V  E   ISG  V    +Y   + + M T+   GP   R P +IL RT+RGM+P+K             Y G+P  Y   +  V  +  ++ RL   +KY  +G +S ++G
Sbjct:    3 VIDANGLIMGRLASNVAKMLLSGEEVSIVNAERAVISGSKVTTFEEY--DVIRNMGTR-EFGPYFPRRPDRILKRTVRGMLPYKRARGKDAMGRLKVYVGIPYEYQDAE-FVSVEGAEMTRL-SSNKYVTIGDVSRQLG 136          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11
Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 3
Query:   48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 473
            +++A   +LGRLAS +AK LL G++VV+V  E+  I+G       KY +    R  T P  GP + +   +I+ RTIRGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G ++  +G  +
Sbjct:    3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_PYRHO (50S ribosomal protein L13P OS=Pyrococcus horikoshii GN=rpl13p PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11
Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 3
Query:   48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 473
            +++A   +LGRLAS +AK LL G++VV+V  E+  I+G       KY +    R  T P  GP + +   +I+ RTIRGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G ++  +G  +
Sbjct:    3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_SULTO (50S ribosomal protein L13P OS=Sulfolobus tokodaii GN=rpl13p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 53/141 (37.59%), Postives = 73/141 (51.77%), Query Frame = 3
Query:   45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPI-HFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 464
            VVV+A + +LGR+A+ +AK L+ G++VVVV  E+  ISG   R    Y      R    P    I   R P  I+ RT+RGM+P K             + G+PA Y K K+M+  +   V RL KG KY  +G LS  +G
Sbjct:    6 VVVNAENQILGRMATHIAKLLIQGKRVVVVNAEKAIISGPRARVVRGYSLIFSVRKFQNPEKNTIKRPRTPINIVKRTVRGMLP-KNKSGKMMFKNLIVFIGIPAEY-KDKQMIRFEDADVKRL-KG-KYITVGELSKLLG 142          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METHJ (50S ribosomal protein L13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 52/143 (36.36%), Postives = 64/143 (44.76%), Query Frame = 3
Query:   45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 473
            VV+D    +LGRLAS +AK  L G+++ VV  E+  ISG   R    Y    +KR       GP   R P  IL RTIRGMIP+K             Y GVP          I DA K       H    LG +S+ +G  Y
Sbjct:    3 VVIDGDGLLLGRLASNVAKRALAGEEIAVVNAEKAVISGNRARVLGNYK---QKRQRGSREGGPFFPRRPDHILKRTIRGMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKKRLGNPSH--VTLGAVSTFLGAKY 140          
The following BLAST results are available for this feature:
BLAST of FC878031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RL13_ARCFU2.074e-1335.0050S ribosomal protein L13P OS=Archaeoglobus fulgid... [more]
RL13_METMA1.344e-1237.8650S ribosomal protein L13P OS=Methanosarcina mazei... [more]
RL13_PYRKO1.486e-1132.3950S ribosomal protein L13P OS=Pyrococcus kodakarae... [more]
RL13_METKA1.486e-1132.3950S ribosomal protein L13P OS=Methanopyrus kandler... [more]
RL13_PYRFU1.941e-1133.1050S ribosomal protein L13P OS=Pyrococcus furiosus ... [more]
RL13_METBU1.941e-1134.5350S ribosomal protein L13P OS=Methanococcoides bur... [more]
RL13_PYRAB2.535e-1133.1050S ribosomal protein L13P OS=Pyrococcus abyssi GN... [more]
RL13_PYRHO3.311e-1133.1050S ribosomal protein L13P OS=Pyrococcus horikoshi... [more]
RL13_SULTO7.375e-1137.5950S ribosomal protein L13P OS=Sulfolobus tokodaii ... [more]
RL13_METHJ9.632e-1136.3650S ribosomal protein L13P OS=Methanospirillum hun... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA69AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878031 ID=FC878031; Name=FC878031; organism=Citrus clementina; type=EST; length=893bp
TTTGCACGAAAATGGTGTCAGGTTCAGGGATCTGCGCGAAAAGAGTGGTG
GTGGACGCCAGGCACCACATGCTCGGCCGCCTTGCCTCCGTTTTGGCCAA
GGAGCTCTTGAACGGCCAGAAGGTCGTCGTCGTCCGGTGCGAGGAGATTT
GTATATCAGGTGGGCTTGTTAGGCAGAAGATGAAGTACATGAGGTTCTTG
AGAAAGAGGATGAACACTAAGCCTTCTCATGGTCCCATCCATTTTCGAGC
TCCTGCTAAGATCCTTTGGCGTACCATCCGTGGGATGATTCCCCACAAGA
CTAAGCGTGGAGCTGCAGCCCTTGCTCGTTTGAAGGCTTATGAAGGAGTT
CCTGCTCCATATGACAAGACAAAGAGGATGGTCATTCCTGATGCTCTCAA
GGTCTTGAGGCTTCAAAAAGGACACAAGTACTGCTTGTTGGGCAGGCTTT
CATCTGAAGTAGGATGGAACTATTATGACACCATTAAGGAGCTTGAGAAG
AAGAGAAAGGAGAGGGCCCAGGTAGCTTATGAGAGGAGGAAGCAGTTGGC
TAAATTGAGGGTCAAAGCTGAGAAGGCTGCCGAGGAGAGGCTTGGTCCCC
AGCTAGAAATCATTGCTCCCATCAAGTATTGATGATGATGATTCTAGAAA
TCATTGCTCCCATCAAGTATTGATGATGATGATTCGTAAAGAGTTTGTTT
TCCAAATGTTACATCTGAGAAGAGTTTGTTCCCATTATATTTTGTCTTCC
ATTTTGATATTGATGGATTATAGTTTAACTGTGGTAGTTTTGAAGTAGAT
GTTATGCTGTATGCAAACATACTTGTTGAAATTAGTTATTTTGGTTATCA
ATTTGCTCAATTTCATCACAAAGCTGAGATTATGTACTGTCTT
back to top