FC878031
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.074e-13 Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 3 Query: 48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGW 467 V+DA H+LGRL+S +AK LLNG+++VVV E+ I+G + M + R+ K GP R P +I RT+RGM+P K+ + GVP + I DAL + ++ K KY L +S +G+ Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGF 153
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.344e-12 Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 3 Query: 48 VVDARHHMLGRLASVLAKELLNG-QKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 464 V+DA+ +LGRLAS +AK+LL+G +KV ++ E+ ISG +Y R R R T+ GP + P +IL RTIRGM+P+K Y GVP + I DA +RL +KY LG +S ++G Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMG 137
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11 Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 473 +++A +LGRLAS +AK LL G++VV+V E+ I+G KY + R T P GP + + +I+ RT+RGM+P KT Y GVP ++ + I +A + RL KY +G ++ +G + Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPRRGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEA-HMSRLAT-PKYVTVGEVAKFLGGKF 142
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11 Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQK-GHK-YCLLGRLSSEVGW 467 V+DA + +LGRLASV+AK +L G+++ V+ E+ I+G ++ +L+K P GP + R P I R +RGM+P KT Y G P ++ + P+ + + + GH Y LG LS E+G+ Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAEADMSRLGHLWYVTLGELSEELGY 153
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11 Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 473 +++A +LGRLAS +AK LL G++VV+V E+ I+G KY + R T P GP + + +I+ RTIRGM+P KT Y G+P + + I +A V RL + KY +G ++ +G + Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METBU (50S ribosomal protein L13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl13p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11 Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 3 Query: 48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 464 V+DA ++GRLAS +AK LL+G++V +V E ISG V +Y + + M T+ GP R P +IL RT+RGM+P+K Y G+P Y + V + ++ RL +KY +G +S ++G Sbjct: 3 VIDANGLIMGRLASNVAKMLLSGEEVSIVNAERAVISGSKVTTFEEY--DVIRNMGTR-EFGPYFPRRPDRILKRTVRGMLPYKRARGKDAMGRLKVYVGIPYEYQDAE-FVSVEGAEMTRL-SSNKYVTIGDVSRQLG 136
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11 Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 473 +++A +LGRLAS +AK LL G++VV+V E+ I+G KY + R T P GP + + +I+ RTIRGM+P KT Y G+P + + I +A V RL + KY +G ++ +G + Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_PYRHO (50S ribosomal protein L13P OS=Pyrococcus horikoshii GN=rpl13p PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11 Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 48 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 473 +++A +LGRLAS +AK LL G++VV+V E+ I+G KY + R T P GP + + +I+ RTIRGM+P KT Y G+P + + I +A V RL + KY +G ++ +G + Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_SULTO (50S ribosomal protein L13P OS=Sulfolobus tokodaii GN=rpl13p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11 Identity = 53/141 (37.59%), Postives = 73/141 (51.77%), Query Frame = 3 Query: 45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPI-HFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 464 VVV+A + +LGR+A+ +AK L+ G++VVVV E+ ISG R Y R P I R P I+ RT+RGM+P K + G+PA Y K K+M+ + V RL KG KY +G LS +G Sbjct: 6 VVVNAENQILGRMATHIAKLLIQGKRVVVVNAEKAIISGPRARVVRGYSLIFSVRKFQNPEKNTIKRPRTPINIVKRTVRGMLP-KNKSGKMMFKNLIVFIGIPAEY-KDKQMIRFEDADVKRL-KG-KYITVGELSKLLG 142
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13_METHJ (50S ribosomal protein L13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl13p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11 Identity = 52/143 (36.36%), Postives = 64/143 (44.76%), Query Frame = 3 Query: 45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 473 VV+D +LGRLAS +AK L G+++ VV E+ ISG R Y +KR GP R P IL RTIRGMIP+K Y GVP I DA K H LG +S+ +G Y Sbjct: 3 VVIDGDGLLLGRLASNVAKRALAGEEIAVVNAEKAVISGNRARVLGNYK---QKRQRGSREGGPFFPRRPDHILKRTIRGMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKKRLGNPSH--VTLGAVSTFLGAKY 140 The following BLAST results are available for this feature:
BLAST of FC878031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878031 ID=FC878031; Name=FC878031; organism=Citrus clementina; type=EST; length=893bpback to top |