FC878033

Overview
NameFC878033
Unique NameFC878033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EIF3F_MAGGR (Eukaryotic translation initiation factor 3 subunit F OS=Magnaporthe grisea GN=MGG_10653 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.464e-22
Identity = 82/289 (28.37%), Postives = 140/289 (48.44%), Query Frame = 3
Query:   96 SAATSNVTAKVHPLVIFNICDCYVRRP---DQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCR----EVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ--FQEIP--------LDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKLNTA 905
            +A  + +T  + P  I +I D  VRR     QA RVIG L+G    DGT V++R+++ +PH E  DQV +D+EY   ML   LK +P+E ++GW++T   +   SALI  F+        P+P VHLT+ T     +   + Y+S   ++   + A    F ++P         D   +EA   G D    T+   + SD+E +   +E+ + +++   +YV   ++    P +++G+ L   ++  PK+   + +   N                RTQ+ LA++L  A
Sbjct:   23 NANVAPLTVTIQPQAILSILDHAVRRDIRDTQATRVIGALVGVRSEDGTDVEVRSTFAIPHTENEDQVEVDVEYQKNMLALTLKASPRESLLGWYTTSHELNSFSALIQNFFASPETGTFPHPAVHLTMSTD-PGADIEPRCYISAPAAVSPDRAAESCFFIQVPHRTPPTNESDRAALEAIAAGKDDEARTA--PVLSDVEALARSLEQTIDMLDRTSEYVGAVLDEEREPSHALGQYLMNNLSLAPKVDSVSIEHDFNNHIQDVLMVSYLTNTIRTQVDLAQRLALA 308          
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EIF3F_CAEEL (Eukaryotic translation initiation factor 3 subunit F OS=Caenorhabditis elegans GN=eif-3.F PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.607e-21
Identity = 79/293 (26.96%), Postives = 132/293 (45.05%), Query Frame = 3
Query:  108 SNVTAKVHPLVIFNICDCYVRRPDQA------ERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYC---------REVPNPVHLTVDTGFRNGEG---TVKAYVSVNLSL--GDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDK-----LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVP-DNSVGRILSETV-ASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKLNTA 905
            SN+T  VHP V  N+ D ++RR   +      E+ +GTL+G     G++ + N + +P NE +D + +D +++  M+ +  K +P E  VGWF T   +T    + H++Y          RE P  V LT+DT F         V+AY+     +        A F  + ++L     E V   +++     +     L S LE +E    +++  +  +  YV+D  +    P D  +GR L + V AS   + P   D LV               +T+TQL + E+L +A
Sbjct:    3 SNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMG-YYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASARRESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAMQLIEKALDSRRREATLESGLEQLETSTAQMIEWLERMLHYVEDVNKNGEKPGDAQIGRQLMDIVTASSNNMQPEKLDTLVKNTLRDYVMVSYLAKLTQTQLQVHERLVSA 294          
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: PSD7_DICDI (26S proteasome non-ATPase regulatory subunit 7 OS=Dictyostelium discoideum GN=psmD7 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.049e-20
Identity = 67/237 (28.27%), Postives = 115/237 (48.52%), Query Frame = 3
Query:  126 VHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSV-NLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDK 809
            VHP V+ ++ D Y R   D  +RV+G LLGS    G VD+ N Y +P  E         LD  +H  M     K+N +E +VGW+STG  +      I+E + R  PNPV + +D   +      K+YV+V  ++    +   +FQ IP  +  +EAE +  + L    K +S+  L + +   ++ ++ LLT + ++  Y+    +G   P++ +   + + +   P L+     K
Sbjct:   10 VHPTVLLSVVDHYNRVAKDTNKRVVGALLGSN-NKGVVDVSNCYGLPFEEDEANPNIWFLDHNFHENMFAMFKKINARENVVGWYSTGPKIRPADQDINELFRRYTPNPVMVIIDVAPKELGIPTKSYVTVEEINKDTSESTMRFQHIPSSIDAVEAEEICIEHLLRDVKDSSISSLTTQITDKKISLKHLLTNLQEMQHYLKLVCDGTLPPNHQIIGYIQDIINLSPNLNANEISK 245          
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: PSD7_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 7 OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.884e-20
Identity = 69/232 (29.74%), Postives = 113/232 (48.71%), Query Frame = 3
Query:  126 VHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ--FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLS 791
            VHPLV+ +I D Y R   D ++RV+G LLGS    G VD+ NSY VP  E     +   LD  YH +M     ++N +E +VGW+STG  +      +H  +   VPNPV + +D   +      KAY +V     +    +Q  F  +  ++   E E +G + L    K T++  L +++      ++ L   + +I  Y+D  +EG+   ++ +   L +    LP L+
Sbjct:   19 VHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSS-SRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKLTALKGLDARLREIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLN 249          
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: PSD7_DROME (26S proteasome non-ATPase regulatory subunit 7 OS=Drosophila melanogaster GN=Mov34 PE=1 SV=6)

HSP 1 Score: 85.5001 bits (210), Expect = 4.563e-16
Identity = 65/236 (27.54%), Postives = 112/236 (47.46%), Query Frame = 3
Query:  126 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 803
            VHPLV+ ++ D + R  +    +RV+G LLG     G +D+ NS+ VP +E     +   LD +Y   M     KVN +E +VGW+ TG  +      I+E   R  PN V + +D   ++     +AY+SV     D    ++ F+ +P ++   EAE VG + L    K T+V  L   +    + ++ L   + DI +Y+    + +   ++ +   L +    LP ++   F
Sbjct:   13 VHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEAYISVEEVHDDGSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMGLKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQF 248          
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: PSD7_HUMAN (26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens GN=PSMD7 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.917e-14
Identity = 70/242 (28.93%), Postives = 115/242 (47.52%), Query Frame = 3
Query:  126 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGD-RQLAAQFQEIPLDLRMIEAERVGFDIL----KSTSV----DKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDK 809
            VHPLV+ ++ D + R  +    +RV+G LLGS      +D+ NS+ VP +E     +   LD +Y   M     KVN +E IVGW+ TG  +      I+E   R  PN V + +D   ++     +AY+SV     D    +  F+ +  ++   EAE VG + L    K T+V     ++ + + G++ L  +LL    DI  Y++    G+   ++ +   L +    LP +S   F K
Sbjct:   11 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLL----DIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVK 247          
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: CSN6_DICDI (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum GN=csn6 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.917e-14
Identity = 73/278 (26.26%), Postives = 121/278 (43.53%), Query Frame = 3
Query:   96 SAATSNVTAKVHPLVIFNICDCYVRRPDQAE-----RVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD-ILKSTSVDKLPSDLEGMEVLMERLLTLINDIYK----YVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKLN 899
            SA +S +   +HPLV+ NI D + R   Q+      RVIG +LG V     V+I NS+ + +     Q+ LDIEY   + K + ++ P   ++GW+STG  V+    L+H+       +P++L +DT     +          L + + +    F + P  ++  EAER+G + I K T      S L      M   ++++N   K    Y+    E R   + ++ R  S     LP +    F K                 IT+T  SL + ++
Sbjct:   20 SANSSGLEVDLHPLVLINISDHFTRTKVQSNYQDNCRVIGVILG-VQNGRNVEICNSFEMVYATVDKQLVLDIEY---LRKKYEQLFPLYDLLGWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTDSPKSKDLPVIIYESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHIAKVTPSGSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQNILRKASSLCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTSASLNDTID 293          
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: PSD7_MOUSE (26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus GN=Psmd7 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.504e-14
Identity = 70/242 (28.93%), Postives = 114/242 (47.11%), Query Frame = 3
Query:  126 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGD-RQLAAQFQEIPLDLRMIEAERVGFDIL----KSTSV----DKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDK 809
            VHPLV+ ++ D + R  +    +RV+G LLGS      +D+ NS+ VP +E     +   LD +Y   M     KVN +E IVGW+ TG  +      I+E   R  PN V + +D   ++     +AY+SV     D    +  F+ +  ++   EAE VG + L    K T+V     ++ + + G++ L  +LL    DI  Y++    G+   ++ +   L +    LP  S   F K
Sbjct:   11 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLL----DIRSYLEKVASGKLPINHQIIYQLQDVFNLLPDASLQEFVK 247          
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: PSD7_BOVIN (26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus GN=PSMD7 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.270e-14
Identity = 70/242 (28.93%), Postives = 115/242 (47.52%), Query Frame = 3
Query:  126 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGD-RQLAAQFQEIPLDLRMIEAERVGFDIL----KSTSV----DKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDK 809
            VHPLV+ ++ D + R  +    +RV+G LLGS      +D+ NS+ VP +E     +   LD +Y   M     KVN +E IVGW+ TG  +      I+E   R  PN V + +D   ++     +AY+SV     D    +  F+ +  ++   EAE VG + L    K T+V     ++ + + G++ L  +LL    DI  Y++    G+   ++ +   L +    LP +S   F K
Sbjct:   11 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLL----DIRGYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVK 247          
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: RPN8_NEUCR (26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa GN=rpn-8 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.514e-14
Identity = 65/241 (26.97%), Postives = 111/241 (46.06%), Query Frame = 3
Query:  111 NVTAKVHPLVIFNICDCYVR---RPDQAERVIGTLLGSVLPDG-TVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPP 797
            N +  V PLV+ ++ D Y R      +++RV+G LLG    DG  V + NS+ VP  E     +   LD  Y  +M     KVN +E ++GW+ +G  +      I+E + R  PNP+ + VD   +       AY +V+    D    ++ F   P  +   EAE +G + L    +  +V  L + +      ++ L   + DI  Y+   ++G+   ++++   L +    LP LS P
Sbjct:   13 NRSVSVAPLVLLSVVDHYNRTQANKSKSKRVVGVLLGQ--NDGKNVRVSNSFAVPFEEDDKDPSVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLDINELFKRYTPNPLLVIVDVQPKETGVPTDAYFAVDEIKDDGTTTSKTFVHTPSIIEAEEAEEIGVEHLLRDIRDVAVGTLSTRITNQMRSLQGLHHRLRDIQAYLQKVLDGQLPVNHAILGNLQDVFNLLPNLSTP 251          
The following BLAST results are available for this feature:
BLAST of FC878033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
EIF3F_MAGGR1.464e-2228.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_CAEEL3.607e-2126.96Eukaryotic translation initiation factor 3 subunit... [more]
PSD7_DICDI1.049e-2028.2726S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_ARATH8.884e-2029.74Probable 26S proteasome non-ATPase regulatory subu... [more]
PSD7_DROME4.563e-1627.5426S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_HUMAN1.917e-1428.9326S proteasome non-ATPase regulatory subunit 7 OS=... [more]
CSN6_DICDI1.917e-1426.26COP9 signalosome complex subunit 6 OS=Dictyosteliu... [more]
PSD7_MOUSE2.504e-1428.9326S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_BOVIN3.270e-1428.9326S proteasome non-ATPase regulatory subunit 7 OS=... [more]
RPN8_NEUCR9.514e-1426.9726S proteasome regulatory subunit rpn-8 OS=Neurosp... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA13DE07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13DE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878033 ID=FC878033; Name=FC878033; organism=Citrus clementina; type=EST; length=905bp
CTCGCTCTTTGCTTTTTGAATCGAGATCAGAAGAGAAGAAGAAGAATATA
AGAATGGCGGCAAGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAGC
GGCGACGTCGAATGTAACGGCGAAAGTTCACCCGTTGGTTATTTTCAACA
TCTGCGACTGTTACGTCAGACGCCCCGACCAGGCTGAACGCGTCATCGGC
ACGCTTCTTGGCTCCGTTTTGCCCGATGGCACCGTCGATATCCGTAACTC
CTACGTCGTTCCTCACAACGAGTTCTCCGATCAGGTTGCATTGGATATTG
AATACCATCATACCATGTTAAAGTCACATCTAAAGGTGAATCCTCAGGAA
GTGATTGTTGGATGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGC
CTTGATCCATGAATTCTATTGTCGCGAAGTCCCTAATCCTGTCCACCTGA
CTGTAGATACAGGATTCAGAAATGGAGAGGGTACTGTAAAAGCTTATGTT
TCTGTCAATTTGTCTCTTGGAGATCGACAGCTTGCTGCACAATTTCAAGA
AATCCCTCTTGATCTTCGAATGATTGAAGCTGAGCGAGTTGGATTCGATA
TTCTGAAGTCAACATCGGTTGACAAACTCCCTAGTGATTTGGAAGGAATG
GAAGTCCTGATGGAACGGCTACTAACTCTTATTAACGATATCTACAAATA
TGTTGATGACACTGTGGAAGGGCGTGCTGTACCTGATAATAGTGTAGGGC
GTATTCTTTCAGAGACTGTAGCCTCCCTTCCCAAACTGTCACCTCCAGCT
TTTGACAAGCTTGTAAATGACAGCCTACAGGACCAGTTGCTCTTGCTATA
TTTGTCAAGTATCACCAGGACCCAGCTCAGCTTAGCAGAAAAGTTGAACA
CTGCT
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