FC878039

Overview
NameFC878039
Unique NameFC878039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878039_ssr152 microsatellite FC878039_ssr152:152..166. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10486 contig Ccv1_Contig10486:1..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.029e-49
Identity = 91/154 (59.09%), Postives = 117/154 (75.97%), Query Frame = 1
Query:  433 EQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGL---SPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            +QS WA+MPPELL D++ RIE S+ +WP+R++VV+CA VC++WR + KEI+R PE    L+FP+SLKQPGPR + +QCYI R R   TY LYLGL   +  D  K LLAA++ R+ T TD++ISL  DD SR SNTY+GKLRSNFLG KFT+YD
Sbjct:   48 KQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYD 201          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.744e-48
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 1
Query:  373 RRGRSYIAPEGXXXXXKI-----IVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG---DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            RRGRS+ A               +V+ S WAN+PPELL D+I+R+EAS+ +WP+R++VVACA+VC++WR + +EI++ PE CG ++FPVSLKQPGPR+  IQC+I+R++ T TY LYL LS     +  K LL+A++  +AT T++ I +  D+ SR+SN Y+GKLRSN LG KF IYD
Sbjct:   30 RRGRSHSAVHELRDGHAAAAAADVVQSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYD 208          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.662e-47
Identity = 83/157 (52.87%), Postives = 124/157 (78.98%), Query Frame = 1
Query:  424 IIVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG---DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            I+++ ++WAN+P  LL D++++++ S+++WPAR+ VVACA VCK+WR + K+I+++PE  G L+FPVSLKQPGPRD  IQCYI+R++   TY LYL LSP    +  K LL+A++ R+AT T+++IS+  D+ SR+S+TY+GKL+SNFLG KF +YD
Sbjct:   48 IVIKNTRWANLPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDADNISRSSSTYIGKLKSNFLGTKFIVYD 204          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.077e-46
Identity = 89/174 (51.15%), Postives = 126/174 (72.41%), Query Frame = 1
Query:  373 RRGRSYIAPEGXXXXXKIIVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG---DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            RRG+S+ A         +I + S WA++PPELL DII+R+E S+ +WP+R+ VVACA VC++WR + KEI++ PE CG ++FP+SL+QPGPRD  +QC+IRR++ T TY LYL L      D  K LL+A++   AT T+++IS+  ++ SR++NT +GKLRSNFLG KF IYD
Sbjct:   30 RRGKSHGAVHELHDPVPVI-QSSCWASLPPELLRDIIERLEESEATWPSRKHVVACAGVCRTWREMCKEIVKNPELCGKITFPISLRQPGPRDGTMQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTNTNIGKLRSNFLGTKFVIYD 202          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.556e-45
Identity = 85/156 (54.49%), Postives = 118/156 (75.64%), Query Frame = 1
Query:  427 IVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLS---PGDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            I+ +S+WA++PPELL ++I+R+EA +++WP+RR+VV  A+VC++WR + KE + +PE CG L+FPVS+KQPGPRD  IQCYI+R R   TY LYL LS     +  K +LAA++ RK T T++ IS+V  + SR+S T +GKLRSNFLG KF IYD
Sbjct:   53 IIPESRWASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMVSGNISRSSRTNIGKLRSNFLGTKFIIYD 208          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.533e-43
Identity = 82/150 (54.67%), Postives = 111/150 (74.00%), Query Frame = 1
Query:  445 WANMPPELLHDIIQRIEASQTS-WPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG--DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            W+ +P ELL +I+ R+E      WP+RR+VVACA VC+SWR +TKEI+  PE    L+FP+SLKQ GPRD+ +QC+I+R R T +Y LYLGL+    D  K LLAA K+++AT TD++ISL  DD S+ SN Y+G++RSNFLG KFT++D
Sbjct:   33 WSELPEELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGTKFTVFD 182          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP9_ORYSJ (Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.363e-41
Identity = 79/153 (51.63%), Postives = 105/153 (68.63%), Query Frame = 1
Query:  433 EQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG--DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            E+ +W+ + PELL +I++R++A    WP RRDVVACA VC+ WR     ++R P +CG ++FP SLKQPGPRDAP+ C+IRR +   T+ LYL L+    D  K LLAAR+ R    T+++IS   DD    SN+YVGKLRS+FLG KF IYD
Sbjct:   48 EEERWSRLLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPSSLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQALTDKGKFLLAARRFRNGAHTEYIISYDCDDLFPGSNSYVGKLRSDFLGTKFIIYD 200          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.764e-41
Identity = 82/151 (54.30%), Postives = 107/151 (70.86%), Query Frame = 1
Query:  442 QWANMPPELLHDIIQRIEASQTS-WPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGL--SPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            +W+ +P ELL +I+ R+EA+    WP+RR VVACA VC+ WR +  E +  PE    L+FP+SLKQPGPRD+ +QC+I+R R T +Y LYLGL  S  D  K LLAA K++  T TD++ISL  DD SR S  YVGK+RSNFLG KFT++D
Sbjct:   38 RWSEIPEELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNFLGTKFTVFD 188          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.176e-39
Identity = 73/154 (47.40%), Postives = 108/154 (70.13%), Query Frame = 1
Query:  433 EQSQWANMPPELLHDIIQRIEASQTS-WPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG--DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            ++ +WA + PEL+ ++++R+EAS    WPAR+DVV+CA VC+ WR     ++R P + G ++FP SLKQPGPR+ P+QC+I+R +   T+ LYLGL+    D  K L+AAR+ R+   T++++SL  DD S+ SN Y+GKLRS+F G  F IYD
Sbjct:   30 QEERWARLLPELMSEVVRRVEASGGERWPARKDVVSCACVCRRWRDAAVAVVRPPAESGKITFPSSLKQPGPREFPMQCFIKRNKKNSTFYLYLGLTNATVDKGKFLMAARRFRRGPHTEYIVSLDADDLSQGSNAYMGKLRSDFWGTNFKIYD 183          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP7_ARATH (Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.842e-39
Identity = 79/151 (52.32%), Postives = 101/151 (66.89%), Query Frame = 1
Query:  439 SQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG--DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            S W+ M PELL +II+R+E ++  WP RRDVV CA V K WR +T +  R+    G ++FP  LK PGPRD   QC I+R + T T+ LYL L+P   D  K LLAAR+ R    T+++ISL  DDFS+ SN YVGKLRS+FLG  FT+YD
Sbjct:   42 SSWSAMLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADDFSQGSNAYVGKLRSDFLGTNFTVYD 192          
The following BLAST results are available for this feature:
BLAST of FC878039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
TLP3_ARATH3.029e-4959.09Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP14_ORYSJ9.744e-4850.84Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP5_ARATH1.662e-4752.87Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP13_ORYSJ1.077e-4651.15Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP3_ORYSJ1.556e-4554.49Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]
TLP9_ARATH5.533e-4354.67Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP9_ORYSJ1.363e-4151.63Tubby-like F-box protein 9 OS=Oryza sativa subsp. ... [more]
TLP11_ARATH6.764e-4154.30Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]
TLP1_ORYSJ2.176e-3947.40Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TLP7_ARATH2.842e-3952.32Tubby-like F-box protein 7 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878039 ID=FC878039; Name=FC878039; organism=Citrus clementina; type=EST; length=887bp
ATACAGCCAATTAATTTTAACGGACGAAACGAGACGAAAAAGAGAGGTCA
AAATTTTAAAAAAGGAAAATTCGTTTAAATAAGATGAGAAATCAGGATCC
GAGAAAAGCTTTTTGAGTGGCTCGTGGCAGTTTGCTGGGCAGAGCAGCCT
CTCAGGTCAGGTCAGGGCAGGGTAAGTGGTGGTGACTGCGGTGACGGGGA
GAGAGAGGTATGCGAAGGAGACGACGACCTGAAACGCCTTTTTGTGAAAA
TTGCTAGTTGATTGAAGATGGCGTTGAAGAACATTGTTAAGGAAATGCGA
GATGGTATTGGTAACATATCAAGAAGAGGTTCAGAAAGAAGAGGCTCGGA
GAATGGGAAGCATAATATGCGACGCAGAGGGCGTTCTTATATTGCTCCTG
AAGGTTCTTCATCGTCATCCAAAATAATAGTTGAGCAGAGTCAGTGGGCA
AACATGCCCCCTGAATTGCTGCATGATATTATTCAGCGCATAGAAGCTAG
CCAGACCTCTTGGCCTGCCAGGAGGGATGTTGTTGCTTGTGCTTCTGTTT
GCAAGTCTTGGAGGGCTGTTACAAAGGAGATAATTAGGACTCCTGAGCAA
TGCGGGTTGCTTTCTTTTCCCGTTTCATTGAAGCAGCCGGGTCCAAGAGA
TGCTCCAATTCAATGCTATATTAGAAGGGAAAGGCCGACTGGCACATACA
GACTTTATCTTGGTCTCAGCCCAGGTGATATGAGTAAGTTACTGTTGGCT
GCAAGGAAGATCAGGAAGGCAACAAGCACTGATTTCTTGATATCCTTAGT
TGGAGATGATTTCTCTCGAAACAGCAATACTTACGTTGGAAAACTAAGGT
CTAATTTCCTTGGGAACAAGTTCACAATTTATGACAG
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