FC878039

Overview
NameFC878039
Unique NameFC878039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878039_ssr152 microsatellite FC878039_ssr152:152..166. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10486 contig Ccv1_Contig10486:1..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.142e-38
Identity = 73/154 (47.40%), Postives = 105/154 (68.18%), Query Frame = 1
Query:  433 EQSQWANMPPELLHDIIQRIEASQTS-WPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG--DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            E+ +W  + PEL+ ++++R+EAS    WPAR+D+V+CA VC+ WR     ++R   + G ++FP SLKQPGP+D PIQC+++R +    + LYLGL  G  D  K L+AAR+ R+   T+++ISL  DD S+ SN YVGKLRS+F G  F IYD
Sbjct:   20 EEGRWGGLLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWGTNFKIYD 173          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.016e-36
Identity = 72/152 (47.37%), Postives = 101/152 (66.45%), Query Frame = 1
Query:  436 QSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP--GDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            + +W+ + P+LL DI++ +EA    WP RRDVVACASVC+ WR V   +++ P + G ++FP SLKQPGPRDAP+QC+I+R +   T+ LYLGL+    D  K LLAAR+ R+    ++ I++  D     S + VG L+SNF G KFTI D
Sbjct:   48 EERWSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPSSLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITINSDGLFHGSQSCVGNLKSNFTGTKFTIRD 199          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP4_ARATH (Putative Tubby-like protein 4 OS=Arabidopsis thaliana GN=TULP4 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 1
Query:  454 MPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLG 714
            MPPELL D++ RIE S+ +WP+R++VV+C  VCK+WR + KEI+  PE     +FP+SLKQPGP  + +QCY++R R   T+ LYLG
Sbjct:    1 MPPELLRDVLMRIERSEDTWPSRKNVVSCVGVCKNWRQIFKEIVNVPEVSSKFTFPISLKQPGPGGSLVQCYVKRNRSNQTFYLYLG 87          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TULP2_MOUSE (Tubby-related protein 2 OS=Mus musculus GN=Tulp2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  637 PGPRDAPIQCYIRRERPT------GTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            P PRD  +QC I R +         +Y LYL    G ++  LLA RK +++ ++++LISL   D SRN + +VGK+RSN LG KFTI+D
Sbjct:  315 PAPRDHMVQCRIVRNKHGMDKGMFPSYYLYLEAEDG-VAHFLLAGRKRKRSKTSNYLISLDPKDMSRNGSNFVGKVRSNVLGTKFTIFD 402          
The following BLAST results are available for this feature:
BLAST of FC878039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
TLP10_ORYSJ3.142e-3847.40Tubby-like F-box protein 10 OS=Oryza sativa subsp.... [more]
TLP2_ORYSJ5.016e-3647.37Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TLP4_ARATH4.404e-2452.87Putative Tubby-like protein 4 OS=Arabidopsis thali... [more]
TULP2_MOUSE5.585e-1143.82Tubby-related protein 2 OS=Mus musculus GN=Tulp2 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878039 ID=FC878039; Name=FC878039; organism=Citrus clementina; type=EST; length=887bp
ATACAGCCAATTAATTTTAACGGACGAAACGAGACGAAAAAGAGAGGTCA
AAATTTTAAAAAAGGAAAATTCGTTTAAATAAGATGAGAAATCAGGATCC
GAGAAAAGCTTTTTGAGTGGCTCGTGGCAGTTTGCTGGGCAGAGCAGCCT
CTCAGGTCAGGTCAGGGCAGGGTAAGTGGTGGTGACTGCGGTGACGGGGA
GAGAGAGGTATGCGAAGGAGACGACGACCTGAAACGCCTTTTTGTGAAAA
TTGCTAGTTGATTGAAGATGGCGTTGAAGAACATTGTTAAGGAAATGCGA
GATGGTATTGGTAACATATCAAGAAGAGGTTCAGAAAGAAGAGGCTCGGA
GAATGGGAAGCATAATATGCGACGCAGAGGGCGTTCTTATATTGCTCCTG
AAGGTTCTTCATCGTCATCCAAAATAATAGTTGAGCAGAGTCAGTGGGCA
AACATGCCCCCTGAATTGCTGCATGATATTATTCAGCGCATAGAAGCTAG
CCAGACCTCTTGGCCTGCCAGGAGGGATGTTGTTGCTTGTGCTTCTGTTT
GCAAGTCTTGGAGGGCTGTTACAAAGGAGATAATTAGGACTCCTGAGCAA
TGCGGGTTGCTTTCTTTTCCCGTTTCATTGAAGCAGCCGGGTCCAAGAGA
TGCTCCAATTCAATGCTATATTAGAAGGGAAAGGCCGACTGGCACATACA
GACTTTATCTTGGTCTCAGCCCAGGTGATATGAGTAAGTTACTGTTGGCT
GCAAGGAAGATCAGGAAGGCAACAAGCACTGATTTCTTGATATCCTTAGT
TGGAGATGATTTCTCTCGAAACAGCAATACTTACGTTGGAAAACTAAGGT
CTAATTTCCTTGGGAACAAGTTCACAATTTATGACAG
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