FC878039
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 3.142e-38 Identity = 73/154 (47.40%), Postives = 105/154 (68.18%), Query Frame = 1 Query: 433 EQSQWANMPPELLHDIIQRIEASQTS-WPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG--DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885 E+ +W + PEL+ ++++R+EAS WPAR+D+V+CA VC+ WR ++R + G ++FP SLKQPGP+D PIQC+++R + + LYLGL G D K L+AAR+ R+ T+++ISL DD S+ SN YVGKLRS+F G F IYD Sbjct: 20 EEGRWGGLLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWGTNFKIYD 173
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 5.016e-36 Identity = 72/152 (47.37%), Postives = 101/152 (66.45%), Query Frame = 1 Query: 436 QSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP--GDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885 + +W+ + P+LL DI++ +EA WP RRDVVACASVC+ WR V +++ P + G ++FP SLKQPGPRDAP+QC+I+R + T+ LYLGL+ D K LLAAR+ R+ ++ I++ D S + VG L+SNF G KFTI D Sbjct: 48 EERWSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPSSLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITINSDGLFHGSQSCVGNLKSNFTGTKFTIRD 199
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP4_ARATH (Putative Tubby-like protein 4 OS=Arabidopsis thaliana GN=TULP4 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 1 Query: 454 MPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLG 714 MPPELL D++ RIE S+ +WP+R++VV+C VCK+WR + KEI+ PE +FP+SLKQPGP + +QCY++R R T+ LYLG Sbjct: 1 MPPELLRDVLMRIERSEDTWPSRKNVVSCVGVCKNWRQIFKEIVNVPEVSSKFTFPISLKQPGPGGSLVQCYVKRNRSNQTFYLYLG 87
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TULP2_MOUSE (Tubby-related protein 2 OS=Mus musculus GN=Tulp2 PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11 Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1 Query: 637 PGPRDAPIQCYIRRERPT------GTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885 P PRD +QC I R + +Y LYL G ++ LLA RK +++ ++++LISL D SRN + +VGK+RSN LG KFTI+D Sbjct: 315 PAPRDHMVQCRIVRNKHGMDKGMFPSYYLYLEAEDG-VAHFLLAGRKRKRSKTSNYLISLDPKDMSRNGSNFVGKVRSNVLGTKFTIFD 402 The following BLAST results are available for this feature:
BLAST of FC878039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878039 ID=FC878039; Name=FC878039; organism=Citrus clementina; type=EST; length=887bpback to top |