FC878040

Overview
NameFC878040
Unique NameFC878040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length865
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LIL
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPE--------DDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 105
[Close]
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LIL
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPE--------DDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 105
[Close]
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LIL
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPE--------DDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 105
[Close]
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LIL
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPE--------DDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 105
[Close]
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LIL
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPE--------DDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 105
[Close]
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LIL
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPE--------DDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 105
[Close]
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LIL
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPE--------DDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 105
[Close]
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LIL
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPE--------DDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 105
[Close]
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LIL
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPE--------DDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 105
[Close]
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.155e-13
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 2 
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDL 364
            S K I+LKS +G++FE+EE  A +  TI HMIE +C DN I +  +T +IL  V+EYC KH  V A                   ++DL+ WD +F++ D++T+F L
Sbjct:    2 STKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKH-HVDAAN--------------PCSDDDLEKWDKEFMEKDKSTIFAL 93
The following BLAST results are available for this feature:
BLAST of FC878040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SKP1_XENLA8.845e-1440.00S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT8.845e-1440.00S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB8.845e-1440.00S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE8.845e-1440.00S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA8.845e-1440.00S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN8.845e-1440.00S-phase kinase-associated protein 1 OS=Homo sapien... [more]
SKP1_CHICK8.845e-1440.00S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO8.845e-1440.00S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN8.845e-1440.00S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK8_ARATH1.155e-1339.25SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA8CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA8CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878040 ID=FC878040; Name=FC878040; organism=Citrus clementina; type=EST; length=865bp
AGACATAGCTAGATTTGTTTTCTTTCTTCTCGAAACGATGTCGTCTCCTA
AGATGATCGTACTCAAGAGCTGTGACGGCGAGTCGTTCGAGGTCGAGGAG
GCTGTCGCGCTTGAGTCGACGACCATCAAGCACATGATCGAGGACGACTG
CGCCGATAACGGCATCCCGTTACCGAACGTGACGGGCAAGATCCTGGCGA
AGGTGGTTGAGTATTGCAAGAAACACGTGGAGGTTCCTGCGACCCAGGAT
AGCAACAACAGCGGCGCCAACAGCAACGGTACTGCCACTAACGGTGGTGA
GGAGGATCTCAAAAGCTGGGACACTGACTTCGTCAAAGTTGACCAGGCCA
CTCTCTTCGATCTCATCCTGGTCGGTATTGTTTATCTCTTTGCTTGATCA
AAGTTAGGGTTTGAAATCCTAATATGAAAATTTTGGCTTTATCTCTTTTC
ATTCTCTAATACTGATTGCTTTGGGTAATATTGCCAATATTTTTTATGTT
AGGGTTTGTAAGGTATGTTTTTGTTGTGATCTTGCATCTCCTAATTGTTT
GCTCCGTCCGTAATTCTGCAATTATATTTTGTGATTTAGTGAGTTAATTA
GTATTTTACTTGCTCAAAAGCTTACGAATTTATGATGTTTTTCAAATCTG
ATTGCTGATAACAATTGTAGGACTTTGTAGTTAAGTGATATTGTTGTGGG
CACTGTCTTTATGGGTGTGATTCTAGGATCATTTTTATGAAGGAAATTGA
CCGTTCGTTTTGTGCTTGCATGCATGTTGTATTTCATGTATTCACACTCC
ACTTTGTGTTTAAGGTTTCCTGTTTTGTGCGATTGTCTCGTTTTGAAAAT
GCTTGCCGGTGGTAA
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