FC878041

Overview
NameFC878041
Unique NameFC878041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878041 vs. ExPASy Swiss-Prot
Match: EED_CHICK (Polycomb protein EED OS=Gallus gallus GN=EED PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.132e-51
Identity = 113/260 (43.46%), Postives = 162/260 (62.31%), Query Frame = 3
Query:  120 KREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIW--SMKEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP 863
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD+++K+W  + K     +++S+ +   P+K    F ++ + FP F    +H NYVDC RWLGD ILSKS +N IV W+P
Sbjct:   84 KYSFKCVNSLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSKRMINAIKESYEYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKP 338          
BLAST of FC878041 vs. ExPASy Swiss-Prot
Match: ESC_DROVI (Polycomb protein esc OS=Drosophila virilis GN=esc PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.051e-50
Identity = 102/223 (45.74%), Postives = 142/223 (63.68%), Query Frame = 3
Query:  213 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPS--KFPTKYVQFPVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP 863
            VFAT G NR TVY+C   G +  L  Y D D +E FYT +W+ ++    P L A G  G+IRVID+   +   +++GHG +INE++  P K  L++S SKD ++RLWN+QT +CI IF G  GHR+EVLS+DF+     RI S GMD+++K+W +  +EF   +E S T++   S   FPT    FP F    +H NYVDC +W G+F+LSKS +N IV W+P
Sbjct:   92 VFATAGSNRCTVYECPRKGGLTLLHCYADPDPDEVFYTCAWSYDLKTSAPLLAAAGYRGVIRVIDIEQNEAVDNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNIQTHVCIAIFGGVEGHRDEVLSIDFNMRG-DRIVSSGMDHSLKLWCLNTQEFQHKIELSQTFSQEKSTLPFPTITKHFPDFSTRDIHRNYVDCVQWFGNFVLSKSCENAIVCWKP 313          
BLAST of FC878041 vs. ExPASy Swiss-Prot
Match: ESC_MUSDO (Polycomb protein esc OS=Musca domestica GN=esc PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.498e-50
Identity = 108/262 (41.22%), Postives = 158/262 (60.31%), Query Frame = 3
Query:  102 SLTPSKKREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK--FPTKYVQFPVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP 863
            S + +K+  Y+    L+E   + ++ V FN +  +  + VFAT G NR  +Y+C   G +  +  Y D D +E FYT SW+ ++    P L   G  G+IRVID+   +   ++VGHG +INE++  P + +L++S SKD ++RLWN+QT +CI IF G  GHR+EVLS+DF      RI S GMD+++K+W +   EF   +E S T+    S+  FPT    FP F    +H NYVDC +W GDF+LSKS +N IV W+P
Sbjct:   54 SKSKAKRPAYKYDCHLKEDHGQAIFGVSFNHLLGKDQSMVFATAGSNRCNIYECPRKGGLKLIMCYADPDPDEVFYTCSWSYDLKTSAPLLATAGYRGVIRVIDIHRNESVGNYVGHGQAINELKFHPRQANLLLSGSKDHAIRLWNIQTHVCIAIFGGVEGHRDEVLSIDFDLRG-ERIMSSGMDHSLKLWRIDTPEFKDKIEMSRTFNPNKSQLPFPTIMQHFPEFSTRDIHRNYVDCVQWFGDFVLSKSCENSIVCWKP 314          
BLAST of FC878041 vs. ExPASy Swiss-Prot
Match: ESC_DROME (Polycomb protein esc OS=Drosophila melanogaster GN=esc PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.498e-50
Identity = 108/259 (41.70%), Postives = 154/259 (59.46%), Query Frame = 3
Query:  111 PSKKREYRVTNKLQEGKRP-LYAVVFN-FIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPS--KFPTKYVQFPVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP 863
            P  +  Y+    ++E     ++ V FN  +      VFAT G NRVTVY+C   G +  L  Y D D +E FYT +W+ ++    P L A G  G+IRVIDV   +   +++GHG +INE++  P K  L++S SKD ++RLWN+Q+ +CI I  G  GHR+EVLS+DF+     RI S GMD+++K+W +   EF   +E S T++   S   FPT    FP F    +H NYVDC +W G+F+LSKS +N IV W+P
Sbjct:   56 PKSRAAYKYDTHVKENHGANIFGVAFNTLLGKDEPQVFATAGSNRVTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRGVIRVIDVEQNEAVGNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNIQSHVCIAILGGVEGHRDEVLSIDFNMRG-DRIVSSGMDHSLKLWCLNTPEFHHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWFGNFVLSKSCENAIVCWKP 313          
BLAST of FC878041 vs. ExPASy Swiss-Prot
Match: MES6_CAEEL (Polycomb protein mes-6 OS=Caenorhabditis elegans GN=mes-6 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.342e-17
Identity = 88/310 (28.39%), Postives = 133/310 (42.90%), Query Frame = 3
Query:  120 KREYRVTNKLQEG-KRPLYAVVFNF---IDSRYFNVFATVGGNRVTVYQC--------LEGGVIAALQSYVDEDKEESFYTVSWACNV-----DGIPF-LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW--SMKEFWTYVE-----------------------------KSFTWTDLPSK------------FPTKYVQFPVFIAS-----VHSNYVDCNRWL--GDFILSKSVDNE 845
            KR + +T KL E  K+ +Y   FN    ID       ATVGG+ + +Y          L+             ++EES +TV+W  +      D  PF +V GG  G I VID  + KL       G  IN+IRT P   +L+V AS D+S+R+ +++   C+++  G   H   +LSVD+     + I SCG D+ +  W  S+K+   ++E                             KS    ++P K             P      P++  S     +HS+YVDC R+L   ++ LSK   NE
Sbjct:   24 KRPFVLTAKLLEDQKKAIYGCAFNQYAGIDEE--QAVATVGGSFLHMYSVPIDINNIELQWSCNFPTDKSSKVEREESLFTVTWCYDTYEAENDRNPFKVVTGGTLGHIYVIDYVSRKLSNRLRSVGWEINDIRTCPANSNLIVCASSDQSIRIHHIRNEACLIVIGGLECHAGTILSVDWSTDGDF-ILSCGFDHQLMEWDLSVKQVKEHLERACKALHQDKINVLTQSQDIPYVSKGTMRKSAVSRNIPDKEEDQLLELHRELIPRPSCLLPIYTPSSVSTDMHSDYVDCIRFLIGTNYALSKGCGNE 330          
The following BLAST results are available for this feature:
BLAST of FC878041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
EED_CHICK4.132e-5143.46Polycomb protein EED OS=Gallus gallus GN=EED PE=2 ... [more]
ESC_DROVI2.051e-5045.74Polycomb protein esc OS=Drosophila virilis GN=esc ... [more]
ESC_MUSDO3.498e-5041.22Polycomb protein esc OS=Musca domestica GN=esc PE=... [more]
ESC_DROME3.498e-5041.70Polycomb protein esc OS=Drosophila melanogaster GN... [more]
MES6_CAEEL1.342e-1728.39Polycomb protein mes-6 OS=Caenorhabditis elegans G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878041 ID=FC878041; Name=FC878041; organism=Citrus clementina; type=EST; length=877bp
ACGAAACGCTTCAGTGGTTTTCTTGCATAGGTTACGCAGTGACGGGTGCT
AACGTGCGCAGGATGGCGAGGACTGCGATCGGCTGCGAGCCACTGGTAGG
ATCACTAACGCCGTCGAAAAAACGCGAGTACAGAGTCACTAATAAGCTCC
AAGAAGGCAAGCGTCCTTTGTACGCCGTCGTTTTCAACTTCATCGACTCC
CGCTACTTCAACGTCTTCGCCACCGTCGGTGGAAATCGCGTAACTGTATA
CCAATGTCTTGAGGGGGGTGTTATTGCAGCATTGCAGTCTTATGTTGATG
AAGATAAGGAAGAGTCATTTTATACTGTGAGCTGGGCTTGCAATGTGGAT
GGGATCCCCTTCTTAGTGGCAGGAGGCATCAATGGTATCATCCGAGTAAT
TGATGTCAGTAATGAGAAACTTCACAAGAGTTTTGTTGGCCATGGGGATT
CAATAAATGAAATCAGGACCCAGCCACTGAAACCCTCACTTGTGGTGTCT
GCAAGCAAAGATGAATCAGTTCGTCTCTGGAATGTGCAAACTGGAATATG
CATTTTGATATTTGCTGGTGCTGGGGGTCACCGTAATGAAGTTTTGAGCG
TGGACTTTCATCCTTCAGATATCTATCGCATTGCAAGTTGTGGCATGGAC
AACACTGTCAAGATTTGGTCAATGAAAGAGTTCTGGACATATGTAGAGAA
ATCATTCACATGGACAGATCTTCCTTCAAAATTTCCCACAAAATATGTAC
AATTCCCTGTCTTCATAGCATCAGTTCATTCAAATTATGTTGACTGTAAT
CGGTGGCTTGGTGATTTTATTTTATCAAAGAGTGTGGACAATGAAATTGT
ATTGTGGGAACCAAAATGAAGGAACAG
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