FC878050

Overview
NameFC878050
Unique NameFC878050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length865
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11134 contig Ccv1_Contig11134:118..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878050 vs. ExPASy Swiss-Prot
Match: SCP51_ARATH (Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.540e-16
Identity = 50/153 (32.68%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  314 GYVTVNEESGRALFYWFVEA---VEDPDSK-PLVLWLNGGPGCSSIAYGEAEEIGPF--HIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSY-SNTSSDITTNGDKRTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAII 751
            GYV V  ++   +F+W  ++   VE+P    P++LWL GGPG S +  G  +E+GP    +KP   T       W + A++LF+DSPVG G+S+      D+    D+  A+D  K L +   +         +I  ESYGG    +L  ++I
Sbjct:   37 GYVEVRPKAH--MFWWHYKSPYRVENPSKPWPIILWLQGGPGASGVGIGNFQEVGPLDTFLKPRNST-------WLKKADLLFVDSPVGAGYSFVEGNQKDLYVKSDEEAAQDLTKLLQQLFNKNQTLNQSPLFIVAESYGGKIAVKLGLSVI 180          
BLAST of FC878050 vs. ExPASy Swiss-Prot
Match: RISC_HUMAN (Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.450e-16
Identity = 59/155 (38.06%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  317 YVTVNEESGRALFYWFVEAV---EDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPF--HIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDKRTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVP----QLSKAIIR 754
            YVTV +++   +F+W   A    ++    PLV+WL GGPG SS  +G  EEIGP    +KP   T       W Q A++LF+D+PVG GFSY N  S          A D +  L  +     +F+   FYI  ESYGG        +L KAI R
Sbjct:   42 YVTVRKDA--YMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTT-------WLQAASLLFVDNPVGTGFSYVN-GSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQR 186          
The following BLAST results are available for this feature:
BLAST of FC878050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SCP51_ARATH5.540e-1632.68Serine carboxypeptidase-like 51 OS=Arabidopsis tha... [more]
RISC_HUMAN9.450e-1638.06Retinoid-inducible serine carboxypeptidase OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878050 ID=FC878050; Name=FC878050; organism=Citrus clementina; type=EST; length=865bp
AAAGGGCTTAAGTTCTGTTCAGCAGATAAACTGAACAAAGAAAAAAAAAA
AATTCCTCAGAACACTATCATTGGCTCCAACGTTTTTGCTTGATTATGTC
TTCTTTATAAGTCGCAGTACCCCAGTACACTAAACCATATAAAAAATGGC
TTATAATCCAAAAGGGGCTTCCTTTCTTGTTCAAATCTTGTTCATTTGCA
TAATTTTTTATCTGGGCAGTGCCTTTTCAACAGACCCAGTTGCCCAGCAA
AAACTTGACAGAGTTGGGAAGCTACCTGGGCAAAATTTCAATGTCAACTT
TGCCCATTACTCTGGTTATGTCACAGTCAACGAAGAATCCGGGAGGGCTC
TCTTTTATTGGTTCGTTGAAGCTGTTGAAGATCCTGATTCCAAGCCTCTT
GTGCTTTGGCTCAATGGAGGGCCTGGGTGTTCATCCATTGCTTATGGAGA
GGCAGAGGAAATAGGTCCTTTTCACATCAAGCCAGATGGGAAGACCTTAT
ACTTGAATCCTTACTCTTGGAATCAAGTTGCCAACATTCTGTTTCTTGAT
TCCCCCGTTGGTGTTGGTTTTTCATATTCAAATACATCCTCTGATATTAC
GACCAATGGCGATAAAAGGACTGCGGAGGATTCCCTAAAATTTTTACTAA
AGTGGTTAGAACGGTTTTCACAATTTAAAGGAAGGGATTTCTACATCTCC
GGGGAGAGTTATGGAGGGCATTATGTTCCTCAGTTAAGCAAAGCAATCAT
AAGGCACAACCAAGCAACTGGGGAAAGCAATTAATCTGAAGGGCTACATG
GTGGGAAATGCTCTAACTGATGATTACCACGATTACTTGGGCCTTTTCCA
GTTTTGGTGGTCAGC
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