FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gatA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.662e-28
Identity = 77/228 (33.77%), Postives = 115/228 (50.44%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            K+  F+   +E  L QA +   +   GE I +L+G+ IA+KD +      TT  ++ L    P T ++     L+  GAI+VGKTN+ E   G+S  N  Y V  NP+D +++                 P+ALG D GGS+R PA+LCGVVG KPT+G +   G++    ++  +G  A TVED  ++  AI G  P  S    V +P+ S  L         +K+G
Sbjct:   35 KVKAFLTLTKEQALAQAAQVDAKIAAGETIGLLEGIPIAIKDNLCTKGIQTTCASRILEGFVP-TYESTVTQELQEAGAIMVGKTNLDEFAMGSSTENSGYQVTGNPWDVTRVPGGSSGGSAAAVAAGEAPIALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFARTVEDTAILLEAIAGHDPKDSTSLDVDIPQYSQLLQPELPKDKPLKIG 261          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_COXBU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii GN=gatA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.662e-28
Identity = 87/273 (31.87%), Postives = 135/273 (49.45%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV--SLPKVSFPLLKSATSISAIKLGKYDAWF 844
            H+ T+ +  +      I+   + + F+  ++ + NP +    FI+  EE  L QA  +  R  KGE  S L G+ IA KD        T+ G+K L   + P   DA  V +L   GAIL+GKTNM E   G+S  N ++G  +NP+D  ++               L P A G D GGS+R PAALCG+ G KPT+GR+   G++    ++   G +A T EDA ++  A+ G       ++  ++P  +  L    TS+  +K+G    +F
Sbjct:    2 HQKTIAELKQDLRDKTISSVELTQHFLDRIK-TINPTLNS--FISITEEYALTQAKAADARLAKGEATS-LTGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPY--DATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAGPMAQTAEDAALLLNALAGHDAKDSTSINKNVPDYTATL---TTSLEGLKVGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_COXBR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gatA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.662e-28
Identity = 87/273 (31.87%), Postives = 135/273 (49.45%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV--SLPKVSFPLLKSATSISAIKLGKYDAWF 844
            H+ T+ +  +      I+   + + F+  ++ + NP +    FI+  EE  L QA  +  R  KGE  S L G+ IA KD        T+ G+K L   + P   DA  V +L   GAIL+GKTNM E   G+S  N ++G  +NP+D  ++               L P A G D GGS+R PAALCG+ G KPT+GR+   G++    ++   G +A T EDA ++  A+ G       ++  ++P  +  L    TS+  +K+G    +F
Sbjct:    2 HQKTIAELKQDLRDKTISSVELTQHFLDRIK-TINPTLNS--FISITEEYALTQAKAADARLAKGEATS-LTGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPY--DATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAGPMAQTAEDAALLLNALAGHDAKDSTSINKNVPDYTATL---TTSLEGLKVGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_COXBN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gatA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.662e-28
Identity = 87/273 (31.87%), Postives = 135/273 (49.45%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV--SLPKVSFPLLKSATSISAIKLGKYDAWF 844
            H+ T+ +  +      I+   + + F+  ++ + NP +    FI+  EE  L QA  +  R  KGE  S L G+ IA KD        T+ G+K L   + P   DA  V +L   GAIL+GKTNM E   G+S  N ++G  +NP+D  ++               L P A G D GGS+R PAALCG+ G KPT+GR+   G++    ++   G +A T EDA ++  A+ G       ++  ++P  +  L    TS+  +K+G    +F
Sbjct:    2 HQKTIAELKQDLRDKTISSVELTQHFLDRIK-TINPTLNS--FISITEEYALTQAKAADARLAKGEATS-LTGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPY--DATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAGPMAQTAEDAALLLNALAGHDAKDSTSINKNVPDYTATL---TTSLEGLKVGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_COXB2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain CbuG_Q212) GN=gatA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.662e-28
Identity = 87/273 (31.87%), Postives = 135/273 (49.45%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV--SLPKVSFPLLKSATSISAIKLGKYDAWF 844
            H+ T+ +  +      I+   + + F+  ++ + NP +    FI+  EE  L QA  +  R  KGE  S L G+ IA KD        T+ G+K L   + P   DA  V +L   GAIL+GKTNM E   G+S  N ++G  +NP+D  ++               L P A G D GGS+R PAALCG+ G KPT+GR+   G++    ++   G +A T EDA ++  A+ G       ++  ++P  +  L    TS+  +K+G    +F
Sbjct:    2 HQKTIAELKQDLRDKTISSVELTQHFLDRIK-TINPTLNS--FISITEEYALTQAKAADARLAKGEATS-LTGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPY--DATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAGPMAQTAEDAALLLNALAGHDAKDSTSINKNVPDYTATL---TTSLEGLKVGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_COXB1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain CbuK_Q154) GN=gatA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.662e-28
Identity = 87/273 (31.87%), Postives = 135/273 (49.45%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV--SLPKVSFPLLKSATSISAIKLGKYDAWF 844
            H+ T+ +  +      I+   + + F+  ++ + NP +    FI+  EE  L QA  +  R  KGE  S L G+ IA KD        T+ G+K L   + P   DA  V +L   GAIL+GKTNM E   G+S  N ++G  +NP+D  ++               L P A G D GGS+R PAALCG+ G KPT+GR+   G++    ++   G +A T EDA ++  A+ G       ++  ++P  +  L    TS+  +K+G    +F
Sbjct:    2 HQKTIAELKQDLRDKTISSVELTQHFLDRIK-TINPTLNS--FISITEEYALTQAKAADARLAKGEATS-LTGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPY--DATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAGPMAQTAEDAALLLNALAGHDAKDSTSINKNVPDYTATL---TTSLEGLKVGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ALKMQ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkaliphilus metalliredigens (strain QYMF) GN=gatA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.089e-28
Identity = 75/261 (28.74%), Postives = 124/261 (47.51%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            T++D  K Y     T + V + +I  ++E      K++ FI   EE  L +A     +  +GE I +L G+ +A+KD +      T+  ++ L    P   DA  V +LR  GAI++GKTNM E   G+S  N  + V +NP+D +K+                 P+ +G D GGS+R PAA CG VG KPT+G +   G++    ++  +G    TV+D  +    + G  P    ++    +   +      +  +K+G
Sbjct:    7 TIMDIRKGYVQKQFTVKDVVQGYIDRIKELDG---KINAFITLCEESALMEAAVLDEKLSRGEEIGLLGGIPVAIKDNMCTQGIKTSCASEMLADFIP-PYDATIVKKLRAAGAIIIGKTNMDEFAMGSSTENSAFKVTKNPWDLTKVPGGSSGGSAAALAAGFAPLTIGSDTGGSIRQPAAFCGTVGLKPTYGLVSRFGLIAFASSLDQIGPFTKTVKDCALSLQVMQGNDPLDSTSIQQEPMDDYVKDLDKGVKGLKVG 263          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THET2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gatA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.039e-27
Identity = 76/231 (32.90%), Postives = 124/231 (53.68%), Query Frame = 2
Query:   77 GDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            G+++P  VA+ ++  V+E       +  F++ NE  +L++A       +  +P   L G+++AVKD I      TT G++ L    P   +A  V RL+  GA+++GKTN+ E G G+S  +  +   +NP+DP ++               L P+ALG D GGSVR PAA CGV G KPT+GR+   G++    ++  +G +A +V D  ++  A+ GP P    ++ LP
Sbjct:   13 GEVSPLEVAQAYLKRVQELDPG---LGAFLSLNER-LLEEA-------EAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVP-PYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAVAGPDPLDATSLDLP 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MICAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.039e-27
Identity = 80/244 (32.79%), Postives = 127/244 (52.05%), Query Frame = 2
Query:   98 VAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF-PLLKSATSISAIKLG 826
            +A  F+  + ++  P +K   F++   +  L QA +   +  +GE + +L G+ IA+KD +     PTT  ++ L    P   ++    +LR  GA++VGKTN+ E   G+S  N  Y V  NP+D S++                C VALG D GGS+R PA+ CGVVG KPT+G +   G++    ++  +G    TVEDA ++  AI G  P    +++LP   +   LK  TS+  +K+G
Sbjct:   21 IATEFLARI-QALEPQVKS--FLHLTPDLALAQAQKVDEKIARGESLHLLAGIPIALKDNLCTKGIPTTCASRILENFVP-PYESTVTQKLRDLGAVIVGKTNLDEFAMGSSTENSGYHVTANPWDLSRVPGGSSGGSAAAVAAQECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFGRTVEDAAILLQAIAGYDPQDSTSLNLPIPDYSQFLK--TSLKGLKIG 258          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SALRD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinibacter ruber (strain DSM 13855) GN=gatA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.357e-27
Identity = 76/230 (33.04%), Postives = 114/230 (49.57%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            T  D  +A  +G+ +   +   F+  +    N   +++ F + +++  L  A     + ++G P   L G+++AVKD I    YP + G+K L        DA  + RLR  GAI +GKTN  E   G+S    H+G  RNP+ P  +               LC  ALG D GGSVR PAA CG VG KPT+GR+  SG++    ++ ++G L  + EDA  +   I G
Sbjct:    5 TFTDARRALDAGETSCEALVSSFLERIDARDN---EINAFTSVDQDGALNHARYLDSQRERGNP-RPLAGLVLAVKDNICIRGYPVSCGSKMLADFSSLY-DATVIDRLRDAGAIFIGKTNCDEFAMGSSNETSHFGPVRNPHAPEYVPGGSSGGSAAAVAAGLCHAALGSDTGGSVRQPAAFCGTVGLKPTYGRVSRSGLVAFASSLDVIGPLTRSAEDAATILNVIAG 229          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_SYNP24.662e-2833.77Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_COXBU4.662e-2831.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXBR4.662e-2831.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXBN4.662e-2831.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXB24.662e-2831.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXB14.662e-2831.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ALKMQ6.089e-2828.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_THET21.039e-2732.90Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_MICAN1.039e-2732.79Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_SALRD1.357e-2733.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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