FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LEGPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Paris) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23
Identity = 68/231 (29.44%), Postives = 115/231 (49.78%), Query Frame = 2
Query:   41 WTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +++   SKA  + + +   + +  I  ++ + +    ++ FI+ +E+  LK+A  + L  K GE    L G+ +A+KD        TT  +K L   +    DA  V + +  GAI++GKTNM E   G+S  N ++G  +NP+D  ++               L P A+G D GGS+R PAA CG+ G KPT+G +   G++    ++   G  A + ED  ++   I G
Sbjct:    4 YSLAQLSKALHNREFSSVELTQHCINKIQSNKD----LNAFISLDEDQALKEAQSADLVLKNGEG-KPLTGIPMALKDLFCTKRLNTTCASKMLANFQ-APYDATIVTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_HALSA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Halobacterium salinarium GN=gatA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23
Identity = 68/179 (37.99%), Postives = 92/179 (51.40%), Query Frame = 2
Query:  200 TESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGP 736
            TE+T++     P   LDG  +AVKD I     PTT G+K L    P   +A  V  L   G  +VGKTNM E G GT+    ++G  +NP D +++                  +ALG D GGSVR PAA CGVVG KPT+G +   G++    ++  +G +A TVE A  +   I GP
Sbjct:    8 TETTIQGAADGP---LDGTTVAVKDNISTKGVPTTCGSKMLADYEP-PYNATVVEDLLAAGGTIVGKTNMDEFGMGTTTETSYFGPTKNPVDETRVPGGSSGGSAAAVANGDADLALGSDTGGSVRAPAAYCGVVGLKPTYGLVSRYGLVAYANSLEQIGPIAPTVEGAAELLDVIAGP 182          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHLFF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydophila felis (strain Fe/C-56) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23
Identity = 68/234 (29.06%), Postives = 113/234 (48.29%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +R + L+   +  SG+ +   +AE F   +    +   ++  F++  +E   ++A     + ++GEP+  L GV I +KD I  +   TT  +K L   + P   DA  + R+     I++GK NM E   G++     +   +NP+D S +                CP+ALG D GGS+R PAA CGVVGFKP++G +   G++    ++  +G L   VED  +      G
Sbjct:    2 YRKSALELRNSVVSGESSATAIAEYFYNRIETEDS---RIGAFLSLCKERAYEKAAIVDAKRERGEPLGKLAGVPIGIKDNIHVTGLRTTCASKMLENYIAPF--DATVIKRIEAEDGIILGKLNMDEFAMGSTTQYSAFHPTKNPWDLSCVPGGSSGGSAAAVSARFCPMALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVEDVALAMDVFAG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LEPBP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 69/214 (32.24%), Postives = 110/214 (51.40%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNP-PMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVG 679
            T  +  K  + G ++    +E  ++A  E  N    K+  F+  N+E ILKQA ES  R K G+ +S  DG+ I +KD I  +   T+  +K L   V P   DA  + +L+  G +L  + NM E   G+S  N  +  ++NP+D  +I               + P++LG D GGS+R PA+LCG+ G KPT+GR+   G++    ++  +G
Sbjct:    8 TYSEIKKRLNEGSLS----SEELVSAYLERINAVDSKLKAFLELNQEKILKQAKESDDRRKNGKLLSEFDGIPIGIKDNICITGEVTSCSSKILENFVSPY--DATVISKLKEKGFVLFPRLNMDEFAMGSSTENSAFQTSKNPFDSDRIPGGSSGGSAAAVAGSMLPISLGSDTGGSIRQPASLCGIWGLKPTYGRVSRYGLVAYASSLDQIG 215          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LEPBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 69/214 (32.24%), Postives = 110/214 (51.40%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNP-PMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVG 679
            T  +  K  + G ++    +E  ++A  E  N    K+  F+  N+E ILKQA ES  R K G+ +S  DG+ I +KD I  +   T+  +K L   V P   DA  + +L+  G +L  + NM E   G+S  N  +  ++NP+D  +I               + P++LG D GGS+R PA+LCG+ G KPT+GR+   G++    ++  +G
Sbjct:    8 TYSEIKKRLNEGSLS----SEELVSAYLERINAVDSKLKAFLELNQEKILKQAKESDDRRKNGKLLSEFDGIPIGIKDNICITGEVTSCSSKILENFVSPY--DATVISKLKEKGFVLFPRLNMDEFAMGSSTENSAFQTSKNPFDSDRIPGGSSGGSAAAVAGSMLPISLGSDTGGSIRQPASLCGIWGLKPTYGRVSRYGLVAYASSLDQIG 215          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LEGPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 67/231 (29.00%), Postives = 116/231 (50.22%), Query Frame = 2
Query:   41 WTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +++   SKA  + + +   + +  I  ++ + +    ++ FI+ +E+  LK+A  + L  K GE    L G+ +A+KD        TT  +K L   +    DA  V + +  GAI++GKTNM E   G+S  N ++G  +NP+D  +++              L P A+G D GGS+R PAA CG+ G KPT+G +   G++    ++   G  A + ED  ++   + G
Sbjct:    4 YSLAQLSKALHNREFSSVELTQHCINKIQSNKD----LNAFISLDEDQALKEAQSADLVLKSGEG-KPLTGIPMALKDLFCTKRLNTTCASKMLANFQ-APYDATIVTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVSGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_HALHL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 69/233 (29.61%), Postives = 109/233 (46.78%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            H+ TV + S A  +G+I+ R + +  +  + E  +P +     +   +      A ++ LR  +  P++   GV +  KD        TT G++ L   R    DA  V RL   GA+++GK NM E   G+S    ++G  RNP+D   +               L P A G D GGS+R PAAL G+ G KPT+GR+   G++    ++   G  A T ED  ++   + G
Sbjct:    2 HQKTVAEISAALHAGEISSRELTDSLLKRI-EQFDPRLNSLITVTAEQARAAADAADARLRAGEAGPLT---GVPLVHKDIFCTDGVATTCGSRMLEPFR-APYDATVVRRLAEAGAVMLGKANMDEFAMGSSNETSYFGPVRNPWDLDAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPAALSGICGLKPTYGRVSRYGMVAFASSLDQAGPFARTAEDLALLLGGMAG 229          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLOBH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 66/221 (29.86%), Postives = 110/221 (49.77%), Query Frame = 2
Query:   71 SSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S+ ++    + + F+  +    N   K+  ++  +EE+ +K+A E   + +K E +  L G+ + +KD I+      T  +K L        DA    +++    I++GK NM E   G+S  N  + +A+NP+D  ++                  ++LG D GGSVR PA+ CGVVG KPT+GRI  SGV+    T+  VG +   VED  ++ + I G
Sbjct:   16 SNKEVKAEEITKAFLDRINLVDN---KLGAYLYVSEEEAIKKAKEIDGKIEKNEELKALSGIPVGIKDNINVKGMQNTCASKILEGYTS-PYDAHVTEKIKQEEGIILGKLNMDEFAMGSSTENSAFKLAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTGGSVRQPASFCGVVGLKPTYGRISRSGVVAFGSTLDQVGPMGKDVEDCALLTSVIAG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLOB1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 66/221 (29.86%), Postives = 110/221 (49.77%), Query Frame = 2
Query:   71 SSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S+ ++    + + F+  +    N   K+  ++  +EE+ +K+A E   + +K E +  L G+ + +KD I+      T  +K L        DA    +++    I++GK NM E   G+S  N  + +A+NP+D  ++                  ++LG D GGSVR PA+ CGVVG KPT+GRI  SGV+    T+  VG +   VED  ++ + I G
Sbjct:   16 SNKEVKAEEITKAFLDRINLVDN---KLGAYLYVSEEEAIKKAKEIDGKIEKNEELKALSGIPVGIKDNINVKGMQNTCASKILEGYTS-PYDAHVTEKIKQEEGIILGKLNMDEFAMGSSTENSAFKLAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTGGSVRQPASFCGVVGLKPTYGRISRSGVVAFGSTLDQVGPMGKDVEDCALLTSVIAG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: HYIN1_AGRVS (Indoleacetamide hydrolase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=iaaH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 62/180 (34.44%), Postives = 96/180 (53.33%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFP 784
            L G+ +  K  I    +PT+ GT+ L + +P    A  V RL   GA++    NMHEL  G +  N  +G ARNP++ + I+              L    +G D G SVR+PAALCGVVGF+PTFG  P  G++P++ +    G++  +VEDA+++   I    P+Q  ++   ++  P
Sbjct:   66 LMGIPLCFKANIATGIFPTSAGTQGLLRHKPAI-PAKIVERLHSAGALIGASGNMHELSFGITNDNKTFGPARNPWNQALISGGSSGGVAVSVAANLMLGGIGTDTGASVRLPAALCGVVGFRPTFGNYPTDGIVPVSPSRDTPGLIVRSVEDAVLLDRIIRNKCPTQNMSLKGLRLGLP 244          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_LEGPA2.648e-2329.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_HALSA2.648e-2337.99Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_CHLFF2.648e-2329.06Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_LEPBP3.458e-2332.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEPBA3.458e-2332.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPH3.458e-2329.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_HALHL3.458e-2329.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_CLOBH3.458e-2329.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOB13.458e-2329.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
HYIN1_AGRVS4.516e-2334.44Indoleacetamide hydrolase OS=Agrobacterium vitis (... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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