FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METM6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=gatA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.357e-27
Identity = 77/205 (37.56%), Postives = 109/205 (53.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLR-YKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK 772
            FI+ N E +LK+A E     Y K +P   L G ++AVK  I+   Y  +  +K L K    T DA  V +LRL GA++VG TNM E  +G+SG   ++G  +NP    +I               LC +A+G D GGS+R PA+ CG+VGFKP++G +   G+  L  +   +G L    EDALV+  AI G   S   ++  PK
Sbjct:   21 FIDVNSEKVLKEAEELEKNDYLKNKP---LYGKIVAVKSNINVKGYKISCASKTLEKYTG-TYDATVVKKLRLQGALIVGMTNMDEFASGSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIGPLTKNAEDALVLTNAIKGIDRSDSTSLETPK 221          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_FRASC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Frankia sp. (strain CcI3) GN=gatA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.314e-27
Identity = 77/222 (34.68%), Postives = 111/222 (50.00%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            F++ + +  L  A     R   GE +  L GV +A+KD       PTT G++ L    P   DA  V RLR    +L+GK NM E   G+S  N  +G  RNP+D ++I                 P+ALG D GGS+R PAALCG+VG KPT+G +   G++  + ++   G LA TV DA +++AAI G  P    +V  P  +         I  +++G
Sbjct:   57 FLHVDADGALAAARSVDDRRAAGERLGPLAGVPLALKDVFTTRGMPTTCGSRILEGWHP-PYDATVVSRLRAADVVLLGKANMDEFAMGSSTENSAFGPTRNPWDVTRIPGGSSGGSAAAVAAFEAPLALGTDTGGSIRQPAALCGLVGVKPTYGGVSRYGLVAFSSSLDQAGPLARTVTDAALLHAAIAGHDPLDSTSVDAPVPAVVAAARQRDIRGMRVG 277          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THET8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gatA PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.022e-27
Identity = 76/231 (32.90%), Postives = 123/231 (53.25%), Query Frame = 2
Query:   77 GDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            G+++P  VA+ ++  V+E       +  F++ NE  +L++A       +  +P   L G+++AVKD I      TT G++ L    P   +A  V RL+  GA+++GKTN+ E G G+S  +  +   +NP+DP ++               L P+ALG D GGSVR PAA CGV G KPT+GR+   G++    ++  +G +A +V D  ++  A  GP P    ++ LP
Sbjct:   13 GEVSPLEVAQAYLKRVQELDPG---LGAFLSLNER-LLEEA-------EAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVP-PYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLP 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RHOBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodopirellula baltica GN=gatA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.022e-27
Identity = 79/255 (30.98%), Postives = 122/255 (47.84%), Query Frame = 2
Query:   62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            K   SG++T   V  + + A+R S      ++ F +  EE  ++ A       K G+ +  L G+ +A+KD +  S  PTT  +K L    P   DA  V RL+  GAI+VGKTNM E   G S      GV  NP+D +K                  P++LG D GGS+R PAA CG+ G KPT+GR+   G++    ++   G +  +V+D  +   A+ G  P    +V+     F    +A  +  +++G
Sbjct:   10 KQLDSGEVTAVEVIAQSLAAIRASQPT---INAFTHVAEETAMQAAEAVDADRKAGKTLGPLAGLPVAIKDVLCTSDMPTTCSSKMLEGFVP-PYDATVVARLKSAGAIVVGKTNMDEFAMGASTETSAMGVTGNPWDTTKTPGGSSGGAAAAVAAGAVPLSLGTDTGGSIRQPAAFCGITGLKPTYGRVSRYGLVAFASSLDQAGPMGWSVDDVAIGLQAMAGYDPRDSTSVNAEVPDFTPAMAAEDVRGMRIG 260          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THEEB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermosynechococcus elongatus (strain BP-1) GN=gatA PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.947e-27
Identity = 72/204 (35.29%), Postives = 106/204 (51.96%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWL-HKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            F+    +  L QA E   R   GE I +L G+ +A+KD +      TT  +K L H V P   ++    +L+  GAI+VGKTN+ E   G+S  N  +G   NP++P +++               C  ALG D GGS+R PAA CGVVG KPT+G +   G++    ++  +G LA TV DA ++  AI G  P    ++ +P
Sbjct:   39 FLTVTRDRALAQAAEVDKRLAAGEEIGLLTGIPLAIKDNLCTYGVRTTCASKMLEHFVPPY--ESTVTEKLQAAGAIMVGKTNLDEFAMGSSTENSAFGFTANPWNPERVSGGSSGGSAAAVAARECAAALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPLAPTVTDAAILLGAIAGHDPKDATSLRVP 240          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_TRIEI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Trichodesmium erythraeum (strain IMS101) GN=gatA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.155e-27
Identity = 73/207 (35.27%), Postives = 109/207 (52.66%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            K+  FI    E  + QA +   +   GE I +L G+ IAVKD I     PTT G+K L    P   ++    +L   GAI++GKTN+ E G G+S  N  Y V  NP+D +++                  VALG D GGS+R PA+ CGVVG KPT+G +   G++    ++  +G L+ TV+D+ ++  AI G  P    ++++P
Sbjct:   35 KLKSFICVTAEKAIAQARQVDAKIAAGEKIGLLTGIPIAVKDNICTRGIPTTCGSKILQNFIP-PYESTVTQKLVDAGAIILGKTNLDEFGMGSSTENSAYQVTTNPWDNTRVPGGSSGGSAAAVASAESVVALGSDTGGSIRQPASFCGVVGIKPTYGLVSRYGLVAYASSMDQIGPLSRTVKDSAILLQAIAGYDPKDSTSLNVP 240          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_AERPE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Aeropyrum pernix GN=gatA PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.155e-27
Identity = 78/232 (33.62%), Postives = 121/232 (52.16%), Query Frame = 2
Query:   41 WTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLR-YKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +TV    ++Y +GD  P     R + A+R        ++ FI+   E++L  A E   R +++GE    L+GV++ VKD I  S  PTT G++ L    P   +A  V RL + GAI++GKTN+ E   G++G    +G  RNP+D S++                C  ALG D GGSVR+PAA    VG KPT+G +   G++P   ++  +  +A + ED +++   I G
Sbjct:    5 YTVKQLLESYRAGDTDPVEHVSRVLDALRRWERD---VNAFISLEAEEVLIDAAEEAARRWRRGEARR-LEGVVVGVKDNISTSFLPTTAGSRMLDGYIP-PFNATVVERLLMEGAIIIGKTNLDEFAMGSTGEFSAFGPTRNPWDLSRVPGGSSSGSGACLAYGACDAALGSDTGGSVRLPAAYTATVGLKPTYGLVSRYGLIPYANSLEQISPMARSSEDVMLLLEVIAG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: HYIN_PSESS (Indoleacetamide hydrolase OS=Pseudomonas syringae pv. savastanoi GN=iaaH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.733e-27
Identity = 83/252 (32.94%), Postives = 124/252 (49.21%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSA 799
            T+    +A + G+I    + ER +      +    +++ FI   E D + Q  E+     KG P   L G+ ++ KD I     P T GT+ +        DA  V +LR  GA++ GK NMHEL  G + INPH+G   NP  P                  + P+++G D GGS+R+PAA CG+ GF+PT GR   +G++P++ T   VG+L  T  DA  +Y  ++G    QQ        SFPL ++A
Sbjct:    6 TLESLCQALADGEIAAAELRERALDTEARLA----RLNCFIR--EGDAVSQFGEAD-HAMKGTP---LWGMPVSFKDNICVRGLPLTAGTRGMSGF-VSDQDAAIVSQLRALGAVVAGKNNMHELSFGVTSINPHWGTVGNPVAPGYCAGGSSGGSAAAVASGIVPLSVGTDTGGSIRIPAAFCGITGFRPTTGRWSTAGIIPVSHTKDCVGLLTRTAGDAGFLYGLLSG---KQQ--------SFPLSRTA 235          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: HYIN_PSESY (Indoleacetamide hydrolase OS=Pseudomonas syringae pv. syringae GN=iaaH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = 2
Query:  251 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            GV ++ KD I     P T GT+ +        DA  V +L+  GA++ GK NMHEL  G + INPH+G   NP  P                  + P+++G D GGS+R+PAA CG+ GF+PT GR+  +G++P++ T   VG+L  T  DA  VY  ++G
Sbjct:   65 GVPVSFKDNICVRGLPLTAGTRGMSGFI-ADQDAAIVSQLKALGAVVAGKNNMHELSFGVTSINPHWGAVGNPVAPGYCAGGSSGGSAAAVASGIVPLSVGTDTGGSIRIPAAFCGITGFRPTTGRLSTAGIIPVSHTKDCVGLLTRTAGDAEFVYGLLSG 224          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DESMR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.148e-26
Identity = 72/205 (35.12%), Postives = 98/205 (47.80%), Query Frame = 2
Query:  233 PISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF-PLLKSATSISAIKLGKYDAWF 844
            P   L GV + VKD I     PTT G+K L    P   DA C+ ++R  GA+++GK NM E   G+S  N  Y V  NP+D  K+                C  ALG D GGS+R PAA CG VG KPT+GR+   G++    ++  +G L  T +DA  V   I GP P            F   L  A  ++ + +G  D ++
Sbjct:   66 PDQRLWGVPVLVKDAICVKDAPTTCGSKILENFTPFY-DASCIEKMRAAGAVILGKANMDEFAMGSSTENSAYKVTANPWDLGKVPGGSSGGSAAAVAAGQCFAALGTDTGGSIRQPAAFCGTVGIKPTYGRVSRYGLVAYGSSLDQIGPLTRTADDAAAVLGVIAGPDPKDSTCAPRDVPDFEAALAGAADLAGLTIGLPDEYW 269          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_METM61.357e-2737.56Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_FRASC2.314e-2734.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_THET83.022e-2732.90Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_RHOBA3.022e-2730.98Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_THEEB3.947e-2735.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_TRIEI5.155e-2735.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_AERPE5.155e-2733.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
HYIN_PSESS6.733e-2732.94Indoleacetamide hydrolase OS=Pseudomonas syringae ... [more]
HYIN_PSESY8.793e-2737.89Indoleacetamide hydrolase OS=Pseudomonas syringae ... [more]
GATA_DESMR1.148e-2635.12Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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